DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and smad9

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001315428.1 Gene:smad9 / 445564 ZFINID:ZDB-GENE-031014-1 Length:466 Species:Danio rerio


Alignment Length:512 Identity:126/512 - (24%)
Similarity:201/512 - (39%) Gaps:148/512 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 MISATTFTTMFRKCCGGATESTSGSTLTIPVSTSRATAHPPQTQAQNGKRFRED-FEALMKQLKR 230
            |.|:|:.|::|              :.|.| :..|...   ..|....:::.|. .::|:|:||:
Zfish     1 MHSSTSITSLF--------------SFTSP-AVKRLLG---WKQGDEEEKWAEKAVDSLVKKLKK 47

  Fly   231 KQRNELLLAVKSRLDPPTKTQRDVVEPTTTTAPTYLQCILIPCKTQTVWE-------PHVTASRL 288
            |         |..::...|......:|:        :|:.||.......:       |||...|:
Zfish    48 K---------KGAMEELEKALSCPGQPS--------KCVTIPRSLDGRLQVSHRKGLPHVIYCRV 95

  Fly   289 FFWRELWNAKELKRLPTC--PAARDCIYMCCNPLHWFRILHQPETESPT-PPY----------QR 340
            :.|.:|.:..|||.|..|  |.......:|.||.|:.|:      |:|. ||.          |.
Zfish    96 WRWPDLQSHHELKALDCCEFPFGSKQKEICINPYHYRRV------ETPVLPPVLVPRHSEFNPQH 154

  Fly   341 SKMLRLKDADFEED---SQN----DAKSAALSTWSAESTSISNIYKPALY------ESVTTDGKD 392
            |.:.:.::|....:   .||    |:..|...:..:.|.|.|....||.:      .|.|..|..
Zfish   155 SLLAKFRNASLHNEPLMPQNATFPDSFPAMPCSSFSSSPSSSLNPSPAAHSFPNSPSSATEPGSP 219

  Fly   393 HNINSQV---------------------------------------------WCQIAYWEMAHRV 412
            :.|.::.                                             ||.:||:|:.:||
Zfish   220 YQITAETPPPPYSMMESSPSEDVKPAESSENKLILTAPQRDLRPVCYEEPEYWCSVAYYELNNRV 284

  Fly   413 GEFFHAKTNAVNIYTDGIV--ASEVDSMCLRDLTPAGNQIHSVVPKARHTVGLGVTLSLENGDVW 475
            ||.|||  :|.:|..||..  ::..:..||..|:....  :|.:...|..:|.||.|....|:|:
Zfish   285 GETFHA--SARSILVDGFTDPSNNKNRFCLGLLSNVNR--NSTIEHTRRHIGKGVHLYYVGGEVY 345

  Fly   476 IYNRGNTTIFVDS----------PTLSENLDRVCKVMPGYCLKAFETNR-AELLSMR-DHGHHPM 528
            .....:::|||.|          ||      .|||:..|..||.|.... |:|||.. :||...:
Zfish   346 AECLSDSSIFVQSRNCNYQHGFHPT------TVCKIPSGCSLKIFNNQLFAQLLSQSVNHGFEVV 404

  Fly   529 GPVDYF-SIKISFGKGWGRDYKRQDIMGCPCWLEVHFSHLRXQYL--MLARSAGPHS 582
            ..:... :|::||.||||.:|.|||:...|||:|:|. |...|:|  :|.:...||:
Zfish   405 YELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHL-HGPLQWLDKVLTQMGSPHN 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 31/141 (22%)
MH2_I-SMAD 400..565 CDD:199821 62/179 (35%)
smad9NP_001315428.1 MH1_SMAD_1_5_9 13..136 CDD:199814 33/149 (22%)
MH2_SMAD_1_5_9 266..466 CDD:199822 68/206 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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