DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and Med

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_524610.1 Gene:Med / 43725 FlyBaseID:FBgn0011655 Length:771 Species:Drosophila melanogaster


Alignment Length:688 Identity:146/688 - (21%)
Similarity:195/688 - (28%) Gaps:289/688 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PSNGVSAA------PPAQPPR--PPPPPHRPRPHQCTPSFGYSCNEEDSLAMRQTPLPPYSSIAC 75
            |.:||:.:      ||  |||  .||...:.:|.|                  |||.|..     
  Fly   251 PQDGVAGSRGSWMVPP--PPRLGQPPQQQQQQPQQ------------------QTPQPTQ----- 290

  Fly    76 GMDCSSSNSSSCGQSLSLSQGQGHNNNNSHPYRRLPNHMD-----VLPPPPSACD---------- 125
                         |..:.||...|:....|....:|..|:     ..||||....          
  Fly   291 -------------QQQAQSQAAAHSLPVPHGMPGMPGPMNPGPVMAPPPPPQQAQNPQGNGVHHT 342

  Fly   126 --RCCTAPGYSCASSCDDMLIDGSDLDQDRSPDQ----------------------GQVQPVDRR 166
              ...|.|..:.|..............|.:...|                      ||..||   
  Fly   343 QANSPTDPASALAMQQQQQQQQQQQQQQQQQQQQSGGVPNGSVNAGGGAAAGGQYYGQPPPV--- 404

  Fly   167 MISATTFTTMFRKCCGGATE-------------STSGSTLTIPVSTSR--ATAHPPQTQAQNGKR 216
                    :..:...||.|.             |..||..:.||....  .||.|...|.|    
  Fly   405 --------SQMQGAGGGGTSVAPSVHAQQNGYVSQPGSAGSAPVGGGGVFGTAQPTPQQPQ---- 457

  Fly   217 FREDFEALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVE-----------PTTTTAP---TYLQ 267
                                        .|||..|.:...           ..|.|.|   ||  
  Fly   458 ----------------------------QPPTGVQANTGSAGAQAGAGGGAAGTWTGPNTLTY-- 492

  Fly   268 CILIPCKTQTVWEPHVTASRLFFWRELWNAKELKRLPTCPAARDCIYMCCNPLHWFRILHQPETE 332
                   ||::..|...:....||....:..                           |..|:  
  Fly   493 -------TQSMQPPDPRSLPGGFWNSSLSGD---------------------------LGSPQ-- 521

  Fly   333 SPTPPYQRSKMLRLKDADFEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINS 397
             .|||.|:               |...:...||.           ..|..|              
  Fly   522 -QTPPQQQ---------------QQQQQPRLLSR-----------QPPPEY-------------- 545

  Fly   398 QVWCQIAYWEMAHRVGEFFHAKTNAVNIYTDGIV-ASEVDSMCLRDLTPAGNQIHSV--VPKARH 459
              ||.|||:|:..:|||.|...:...|:..||.| .|..:..||..|    :.:|..  ..:||.
  Fly   546 --WCSIAYFELDTQVGETFKVPSAKPNVIIDGYVDPSGGNRFCLGAL----SNVHRTEQSERARL 604

  Fly   460 TVGLGVTLSLE-NGDVWIYNRGNTTIFVDSPTLSENL-----DRVCKVMPGYCLKAFE------- 511
            .:|.||.|.|. .||||:....:.::||.|..|....     |.|.|:.|..|:|.|:       
  Fly   605 HIGKGVQLDLRGEGDVWLRCLSDNSVFVQSYYLDREAGRTPGDAVHKIYPAACIKVFDLRQCHQQ 669

  Fly   512 -----TN-----RAELLSMRDHGHHPMG------------PVDYFS----IKISFGKGWGRDYKR 550
                 ||     .|:..::....:..||            .||...    :::||.||||.||.|
  Fly   670 MHSLATNAQAAAAAQAAAVAGVANQQMGGGGRSMTAAAGIGVDDLRRLCILRLSFVKGWGPDYPR 734

  Fly   551 QDIMGCPCWLEVHFSHLRXQYLMLARSA----GPHSAS 584
            |.|...|||:|||. |...|.|.....|    ||.:|:
  Fly   735 QSIKETPCWIEVHL-HRALQLLDEVLHAMPIDGPRAAA 771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 21/147 (14%)
MH2_I-SMAD 400..565 CDD:199821 65/206 (32%)
MedNP_524610.1 MH1_SMAD_4 42..166 CDD:199816
MH2_SMAD_4 543..760 CDD:199823 69/237 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444267
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13703
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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