DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and smad2

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001276944.1 Gene:smad2 / 30639 ZFINID:ZDB-GENE-990603-7 Length:468 Species:Danio rerio


Alignment Length:500 Identity:118/500 - (23%)
Similarity:180/500 - (36%) Gaps:157/500 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 MISATTFTTMFRKCCGGATESTSGSTLTIPVSTSRATAHPPQTQAQNGKRFREDFEALMKQLKRK 231
            |.|...||....|...|..:|.|||:         ......:...|..|...:..::|:|:||  
Zfish     1 MSSILPFTPPVVKRLLGWKKSASGSS---------GAGGGGEQNGQEEKWCEKAVKSLVKKLK-- 54

  Fly   232 QRNELLLAVKSRLDPPTKT-QRDVVEPTTTTAPTYLQCILIPCKTQTVWE--------------- 280
                             || |.|.:|...||.....:|:.||.....:|.               
Zfish    55 -----------------KTGQLDELEKAITTQNRNTKCVTIPSNCSEIWGLSTPNTIEQWDTSGL 102

  Fly   281 ----------------------PHVTASRLFFWRELWNAKELKRLPTCPAA----RDCIYMCCNP 319
                                  |||...||:.|.:|.:..||:.:.||..|    :|  .:|.||
Zfish   103 YSYPDQTRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAIETCEYAFNLKKD--EVCVNP 165

  Fly   320 LHWFRI---------------------------------------LHQPET---ESPTPPYQRSK 342
            .|:.|:                                       :..|..   |:|.|.|..  
Zfish   166 YHYQRVETPVLPPVLVPRHTEILTELPPLDDYTNSIPENTNFPTGIEPPNNYIPETPPPGYIS-- 228

  Fly   343 MLRLKDADFEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINSQ--------V 399
                :|.:..:...|.    ::.|.|           ||.....|....:|.::.|        .
Zfish   229 ----EDGEASDQQMNQ----SMDTGS-----------PAELSPSTLSPVNHGMDLQPVTYSEPAF 274

  Fly   400 WCQIAYWEMAHRVGEFFHAKTNAVNI--YTDGIVASEVDSMCLRDLTPAGNQIHSVVPKARHTVG 462
            ||.|||:|:..||||.|||...::.:  :||   .|..:..||..|:....  ::.|...|..:|
Zfish   275 WCSIAYYELNQRVGETFHASQPSLTVDGFTD---PSNSERFCLGLLSNVNR--NATVEMTRRHIG 334

  Fly   463 LGVTLSLENGDVWIYNRGNTTIFVDSPTLSENLD----RVCKVMPGYCLKAFETNR-AELLSMR- 521
            .||.|....|:|:.....::.|||.||..::...    .|||:.||..||.|.... |.||:.. 
Zfish   335 RGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSV 399

  Fly   522 DHGHHPMGPVDYF-SIKISFGKGWGRDYKRQDIMGCPCWLEVHFS 565
            :.|...:..:... :|::||.||||.:|:||.:...|||:|:|.:
Zfish   400 NQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLN 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 35/212 (17%)
MH2_I-SMAD 400..565 CDD:199821 59/173 (34%)
smad2NP_001276944.1 MH1_SMAD_2_3 8..173 CDD:199815 42/194 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 224..254 8/50 (16%)
MH2_SMAD_2_3 267..457 CDD:199826 59/182 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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