DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dad and Smad1

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_006255456.1 Gene:Smad1 / 25671 RGDID:3030 Length:483 Species:Rattus norvegicus


Alignment Length:477 Identity:114/477 - (23%)
Similarity:186/477 - (38%) Gaps:150/477 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 EALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVEPTTTTAPTYLQCILIPCKTQTVWE------ 280
            :||:|:||:|         |..::...|......:|:        .|:.||.......:      
  Rat    35 DALVKKLKKK---------KGAMEELEKALSCPGQPS--------NCVTIPRSLDGRLQVSHRKG 82

  Fly   281 -PHVTASRLFFWRELWNAKELKRLPTC--PAARDCIYMCCNPLHWFRILHQPETESPT-PPY--- 338
             |||...|::.|.:|.:..|||.|..|  |.......:|.||.|:.|:      |||. ||.   
  Rat    83 LPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRV------ESPVLPPVLVP 141

  Fly   339 -------QRSKMLRLK-----------DADFEEDSQN---------------DAKSAALSTWSAE 370
                   |.|.:.:.:           :|.|.:..|.               ::..::.||:...
  Rat   142 RHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPHSHPFPQSPNSSYPNSPGSSSSTYPHS 206

  Fly   371 STS------------------------------------ISNIYKPALYESVTTDGK-------D 392
            .||                                    ::|:..|.|...:...|:       :
  Rat   207 PTSSDPGSPFQMPADTPPPAYLPPEDPMAQDGSQPMDTNMTNMTAPTLPAEINRGGEVSCRSPCE 271

  Fly   393 HNINSQV----------WCQIAYWEMAHRVGEFFHAKTNAVNI--YTDGIVASEVDSMCLRDLTP 445
            ..:::.|          ||.|.|:|:.:||||.|||.:.:|.:  :||  .::..:..||..|:.
  Rat   272 SLLSADVQAVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTD--PSNNKNRFCLGLLSN 334

  Fly   446 AGNQIHSVVPKARHTVGLGVTLSLENGDVWIYNRGNTTIFVDS----------PTLSENLDRVCK 500
            ...  :|.:...|..:|.||.|....|:|:.....:::|||.|          ||      .|||
  Rat   335 VNR--NSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPT------TVCK 391

  Fly   501 VMPGYCLKAFETNR-AELLSMR-DHGHHPMGPVDYF-SIKISFGKGWGRDYKRQDIMGCPCWLEV 562
            :..|..||.|.... |:||:.. :||...:..:... :|::||.||||.:|.|||:...|||:|:
  Rat   392 IPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEI 456

  Fly   563 HFSHLRXQYL--MLARSAGPHS 582
            |. |.. |:|  :|.:...||:
  Rat   457 HL-HGPLQWLDKVLTQMGSPHN 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 29/115 (25%)
MH2_I-SMAD 400..565 CDD:199821 60/179 (34%)
Smad1XP_006255456.1 MH1_SMAD_1_5_9 9..132 CDD:199814 29/119 (24%)
PRK10263 <133..>244 CDD:236669 12/110 (11%)
MH2_SMAD_1_5_9 283..483 CDD:199822 66/206 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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