DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and daf-3

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001300341.1 Gene:daf-3 / 180431 WormBaseID:WBGene00000899 Length:895 Species:Caenorhabditis elegans


Alignment Length:603 Identity:131/603 - (21%)
Similarity:192/603 - (31%) Gaps:211/603 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PSNGVSAAPPAQPPRPPPPPHRP---RPHQCTPSFGYSCNEEDSLAMRQTP-LPPYSSIACGMD- 78
            ||.|.:.|.|.    |...||.|   .|:...|...|..|......|.|.| :||......||: 
 Worm   407 PSVGATFAHPL----PHQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPLHQGYGMNG 467

  Fly    79 --CSSSNSSSCGQSLSLSQGQGHNNNNSHPYRRLPNHMDVLPPPPSACDRCCTAPGYSCASSCDD 141
              |||.|::...|:       .|.|:.||     |||.                 .|.|..:...
 Worm   468 PSCSSENNNPFHQN-------HHYNDISH-----PNHY-----------------SYDCGPNLYG 503

  Fly   142 MLIDGSDL-----DQDRSPDQGQVQPVDRRMISATTFTTMFRKCCGGATESTSGSTLTIPVSTSR 201
            ......|.     .|...|.|          :|..                          .||:
 Worm   504 FPTPYPDFHHPFNQQPHQPPQ----------LSQN--------------------------HTSQ 532

  Fly   202 ATAHPP--QTQAQNGKRFREDFEALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVEPTTTTAPT 264
            ..:|.|  |.|..|                               |||  ..|.|::|:|.|...
 Worm   533 QGSHQPGHQGQVPN-------------------------------DPP--ISRPVLQPSTVTLDV 564

  Fly   265 YLQCILIPCKTQTVWEPHVTASRLFFWRELWNAKELKRLPTCPAARDCIYMCCNPLHWFRILHQP 329
            :.:.    |:.        |....||..|...:..:.|     ::...|....:|:....::.. 
 Worm   565 FRRY----CRQ--------TFGNRFFEGESEQSGAIIR-----SSNKFIEEFDSPICGVTVVRP- 611

  Fly   330 ETESPTPPYQRSKMLRLKDAD-FEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDH 393
                           |:.|.: .|.....||....:..:....||          ||||..|:..
 Worm   612 ---------------RMTDGEVLENIMPEDAPYHDICKFILRLTS----------ESVTFSGEGP 651

  Fly   394 NIN--SQVWCQIAYWEMAHRVGEFFHAKTNAVNIYTD-GIVASEVDSMCLRDLTPAGNQIHSVVP 455
            .::  ::.|..|.|:|...::||   .|.:..|.:.| |.:.||  :.....|.|  |.|...|.
 Worm   652 EVSDLNEKWGTIVYYEKNLQIGE---KKCSRGNFHVDGGFICSE--NRYSLGLEP--NPIREPVA 709

  Fly   456 -KARHTVGLGVTLSL-ENGDVWIYNRGNTTIFVDSPTLSE-----NLDRVCKVMPGYCLKAFETN 513
             |.|..:..|:..|. ::|.||:.||....:||.|..|.|     ..|:|.||.....:|.|..|
 Worm   710 FKVRKAIVDGIRFSYKKDGSVWLQNRMKYPVFVTSGYLDEQSGGLKKDKVHKVYGCASIKTFGFN 774

  Fly   514 ------RAELLSMRDHGHHPMG---PVDYF------------------------SIKISFGKGWG 545
                  |..|||.:....:..|   |::|.                        .:::||.||:|
 Worm   775 VSKQIIRDALLSKQMATMYLQGKLTPMNYIYEKKTQEELRREATRTTDSLAKYCCVRVSFCKGFG 839

  Fly   546 RDY-KRQDIMGCPCWLEV 562
            ..| :|..|..||.|:|:
 Worm   840 EAYPERPSIHDCPVWIEL 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 23/133 (17%)
MH2_I-SMAD 400..565 CDD:199821 57/205 (28%)
daf-3NP_001300341.1 MH1_SMAD_4 218..346 CDD:199816
DWB 659..860 CDD:197770 57/206 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.