DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and sma-3

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_498493.1 Gene:sma-3 / 175955 WormBaseID:WBGene00004857 Length:393 Species:Caenorhabditis elegans


Alignment Length:443 Identity:110/443 - (24%)
Similarity:180/443 - (40%) Gaps:118/443 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 HPPQTQAQNGKRFRED--------FEALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVEPTTTT 261
            |.|..:...|.:..||        .|||:|:||:|...             ..|..|        
 Worm     8 HGPAVKKLLGWKIGEDEEKWCEKAVEALVKKLKKKNNG-------------CGTLED-------- 51

  Fly   262 APTYLQCILI-PCKTQ---TVWE--------------PHVTASRLFFWRELWNAKELKRLPTC-- 306
                |:|:|. ||...   |:.:              |||...|::.|.::.:..||:.:.||  
 Worm    52 ----LECVLANPCTNSRCITIAKSLDGRLQVSHKKGLPHVIYCRVWRWPDISSPHELRSIDTCSY 112

  Fly   307 --PAARDCIYMCCNPLHWFRILHQPE---TESPTP-PYQRSKMLRLKDADFEEDSQNDA-KSAAL 364
              .::...:|:|.||.|:.| |.:|:   :..|:| |.               .|.|.. :|:..
 Worm   113 PYESSSKTMYICINPYHYQR-LSRPQGLNSSMPSPQPI---------------SSPNTIWQSSGS 161

  Fly   365 STWSAESTSISNIYKPALYESVTTDGKDHNINS--------QVWCQIAYWEMAHRVGEFFHAKTN 421
            ||.|..|:...:::        :.||.:..::.        :.|.||.|:|:..||||.|  |..
 Worm   162 STASCASSPSPSVF--------SEDGGEVQVHQRPPPFRHPKSWAQITYFELNSRVGEVF--KLV 216

  Fly   422 AVNIYTDGIV--ASEVDSMCLRDLTPAGNQIHSVVPKARHTVGLGVTLSLENGD----VWIYNRG 480
            .::|..||..  ::....:||..||....  :..:...|..:|.|:  .|:|.:    :.|.|..
 Worm   217 NLSITVDGYTNPSNSNTRICLGQLTNVNR--NGTIENTRMHIGKGI--QLDNKEDQMHIMITNNS 277

  Fly   481 NTTIFVDSPT----LSENLDRVCKVMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFS----IK 537
            :..:||.|..    ::..|.:||::.|...|..||.|.  ...|.:...:....::..|    |:
 Worm   278 DMPVFVQSKNTNLMMNMPLVKVCRIPPHSQLCVFEFNL--FFQMLEQSCNDSDGLNELSKHCFIR 340

  Fly   538 ISFGKGWGRDYKRQDIMGCPCWLEVHFSHLRXQYLMLARSAGPHSASQHLVEP 590
            |||.||||.||.|||:...|||||:.. ::...|:.......|.:   :|:||
 Worm   341 ISFVKGWGEDYPRQDVTSTPCWLELRL-NVPLAYIDQKMKQTPRT---NLMEP 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 36/153 (24%)
MH2_I-SMAD 400..565 CDD:199821 56/178 (31%)
sma-3NP_498493.1 MH1 10..133 CDD:260161 34/148 (23%)
MH2_R-SMAD 197..379 CDD:199820 57/190 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6357
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003707
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.760

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