DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patr-1 and AT1G79090

DIOPT Version :9

Sequence 1:NP_001287369.1 Gene:Patr-1 / 42058 FlyBaseID:FBgn0266053 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_001320315.1 Gene:AT1G79090 / 844250 AraportID:AT1G79090 Length:793 Species:Arabidopsis thaliana


Alignment Length:921 Identity:191/921 - (20%)
Similarity:291/921 - (31%) Gaps:346/921 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SFFGFDTNLPDEDGGDGRIVEAEYDALNDETFGSAINGDWEEAHETMV-----RLGGNGERVRKR 63
            :|||.|.....|.||    :|.|.:.|:........:.|.||..::.:     .|.....::.:.
plant    38 AFFGNDVVEEVELGG----LEEEDEILSFTGIAEDFSFDKEEVGDSRLLSDVDDLASTFSKLNRE 98

  Fly    64 PAESSGNTDFADQGNGAFLRHANPLSSAPSSSGSTPAPL----NAPFRQSRHIGDSDLELNISSM 124
            | :...||              .|::...||..|..|..    ..|....|.|.|||        
plant    99 P-DVYSNT--------------GPITDRRSSQNSLAAEWTHGEELPNWYGRQILDSD-------- 140

  Fly   125 KLDDMDLSSFTTDSEAGGLSNRIKLDSGVWGSQPF----------PNNQHLFREPMRSAFKPQQQ 179
                                 .|| |..||.:|||          |:...|:.|       ||:|
plant   141 ---------------------AIK-DDKVWSAQPFSSLDRVEQRIPDRTKLYPE-------PQRQ 176

  Fly   180 QHQQHQPQQMKPPQEANANFALNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQQAERKMFDDF 244
            .||.|..||          |:..|...||.:.:                                
plant   177 LHQDHNQQQ----------FSSEPILVPKSSFV-------------------------------- 199

  Fly   245 SLGNRQQVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPPRPNLGFPGPEL 309
                  ..|.|..:...  |:..|.....|...||          :|:|:.||      ||..: 
plant   200 ------SYPPPGSISPD--QRLGHPNIPYQSGGPQ----------MGSPNFSP------FPNLQ- 239

  Fly   310 LPTPSSQQQLNGIGGNRVPPGFIYPQGLPGNIPQLPQHPLMQQHMPHNFPLPGGNQRPLPNPQAL 374
                                            ||||.       |.|..|...|| ||...| ||
plant   240 --------------------------------PQLPS-------MHHGSPQHTGN-RPQFRP-AL 263

  Fly   375 PTALNNFAMHPSFNAMRAAGIHPG---------AFMQPPHPHQMLPPRMP------PHPLQAATS 424
            |  |||.   |....|....:|||         ...||||.:.::||:|.      |||:|....
plant   264 P--LNNL---PPAQWMNRQNMHPGDSSGIMNNAMLQQPPHQNGLMPPQMQGSQNRLPHPMQPPLG 323

  Fly   425 -LLGQQPPNSMYNMFNMRLVQEIQQ-NHPLLQQAAVVRQMQQSRAGSVASDRQRSQAQQQQQGRR 487
             :.|.||     .:||..|.:.... |:..:.....:|::   |.||...:||  ..:..|||..
plant   324 HMPGMQP-----QLFNSHLSRSSSSGNYDGMLGFGDLREV---RPGSGHGNRQ--NVRFPQQGFD 378

  Fly   488 PDGTGNYPLEEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRERKAQQNGQMRNSQ 552
            ......||..     :..||..:...::.:||...:::.||:||||:.....:|:          
plant   379 AGVQRRYPFR-----SKYMSAGEIENILRMQLVATHSNDPYVDDYYHQACLAKKS---------- 428

  Fly   553 AHKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNSTSGNTNNGSGGNNNNLTG 617
              ...:|.|...               .|..|:...|.|.|:|                      
plant   429 --AGAKLKHHFC---------------PNHLRDLQQRARSNNE---------------------- 454

  Fly   618 YIFSPLKF--ENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEANATSSSKSSTPLPTSASHDVN 680
                |..|  ..:||::.:.|:..||.:::.|    ..|:|...||...       ||....|..
plant   455 ----PHAFLQVEALGRVPFSSIRRPRPLLEVD----PPNSAKFGNAEHK-------PTDKPLDQE 504

  Fly   681 PSSMRKSRHILLLIETLYRYLLKLEDLESPEVMATIELKKKKEAERIAALEQLEMANKTPEER-- 743
            |  |..:|   :.||.....||:::|:                 :|.....||:......::|  
plant   505 P--MLAAR---VYIEDGLCLLLEVDDI-----------------DRFLEFNQLQDGGHQLKQRRQ 547

  Fly   744 ---AAEAANPQTMNPQLKNKFNYEVETKAALVNKLKAGLAFDKVIAMMNVRKGKILIRRIMPFIA 805
               .:.|.:.|..:|..||..:..::           ...|.:||::...|  |:|||.:.....
plant   548 ALLQSLAVSLQLGDPLAKNGQSQSLD-----------DFLFLRVISLPKGR--KLLIRYLQLIFP 599

  Fly   806 DQSIRWVVWSGVFCSLQTVVKKDKDDVEGVLYALYPEFKKHVNKATFELLVSISSAITLN----- 865
            ...:..:|...:|..|:::.        ||| :..|:..|..||     |.::.:....|     
plant   600 GSDLMRIVCMAIFRHLRSLF--------GVL-SSDPDIIKTTNK-----LATVINLCIQNMELGP 650

  Fly   866 -DKKLAGIFCS 875
             ...||.:.||
plant   651 VSTCLAAVSCS 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Patr-1NP_001287369.1 PAT1 <334..>589 CDD:286811 67/271 (25%)
AT1G79090NP_001320315.1 Atrophin-1 <149..>330 CDD:397323 66/300 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR21551
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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