DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patr-1 and AT4G14990

DIOPT Version :9

Sequence 1:NP_001287369.1 Gene:Patr-1 / 42058 FlyBaseID:FBgn0266053 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_567452.2 Gene:AT4G14990 / 827158 AraportID:AT4G14990 Length:787 Species:Arabidopsis thaliana


Alignment Length:1000 Identity:187/1000 - (18%)
Similarity:308/1000 - (30%) Gaps:367/1000 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 FFGFDTNLPDEDGGDGRIVEAEYDALNDETFGSAINGDWEEAHETMVRLGGNGERVRKRPAESSG 69
            |:.|.....|.:       .|.:||...|.||.::    ||     |.|||..:....|......
plant     9 FYNFAKTSSDNN-------SALFDASQYEFFGQSL----EE-----VELGGLDDDGTVRGHVDDE 57

  Fly    70 NTDFADQGNGAFLRHANPLSSAPSSSGSTPAPLNAPFRQSRH---IGDSDLELNISSMKLDDMDL 131
            .....|:..||.|...:.:...    .:|.|.||......:|   |||.    ...|...:....
plant    58 EYHLFDKREGAGLGSLSDMDDL----ATTFAKLNRNVTGPKHLGVIGDR----GSGSFSRESSTA 114

  Fly   132 SSFTTDSEAGGLSNRIKLDSGV----WGSQP--FPNNQHLFREPMRSAFKPQQQQHQQHQPQQMK 190
            :.:|.|:|.....::..::..|    |.|||  .||:..|:    |::..||||...||      
plant   115 TDWTQDNEFTSWLDQHTVEEQVQEASWSSQPQSSPNSNSLY----RTSSYPQQQTQLQH------ 169

  Fly   191 PPQEANANFALNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQQAERKMFDDFSLGNRQQVPTP 255
                    ::..|...|:.|                              |..|        |:|
plant   170 --------YSSEPIIVPEST------------------------------FTSF--------PSP 188

  Fly   256 TMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPPRPNLGFPGPELLPTPSSQQQLN 320
                          .::|||..|... |:.|        :.|......|..|...|..:|...|:
plant   189 --------------GKRSQQSSPSHI-HRAP--------SLPGGSQSNFSAPNASPLSNSTFHLS 230

  Fly   321 GIG------GNRVPPGFIYPQGLP--GNIPQLPQHPLMQQHMPHNFPLPGGNQRPLPNPQALPTA 377
            |:.      ||.:..   |....|  ||:.|.|         ||....||               
plant   231 GLSHGPSHYGNNLAR---YASCGPTLGNMVQQP---------PHWVTDPG--------------- 268

  Fly   378 LNNFAMHPSFNAMRAAGIHPGAFMQPPHPHQMLPPRMPPHPLQAATSLLGQQPPNSMYNMFNMRL 442
                .:|...:|:    :|  :.||..| .|.||||                      |.|..:.
plant   269 ----LLHGDHSAL----LH--SLMQQQH-LQQLPPR----------------------NGFTSQQ 300

  Fly   443 VQEIQQNHPLLQQAAVVRQMQQS----------RAGSVASDRQR-SQAQQQQQGRRPDGTGNYPL 496
            :..:||...|...||:..|:..|          ..|.|...:.: |...::.:|.....|.:...
plant   301 LISLQQRQSLAHLAALQSQLYSSYPSPSHKALFGVGEVREHKHKSSHRSRKNRGGISQQTSDLAS 365

  Fly   497 EEYDE----YANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRERKAQQNGQMRNSQAHKDN 557
            ::.:.    .:..|::.:...::.:|.|..::..||::|||:.....:|:  :|.....|.:..:
plant   366 QKSESGLQFRSKYMTSEEIESILKMQHSNSHSSDPYVNDYYHQARLAKKS--SGSRTKPQLYPSH 428

  Fly   558 QLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNSTSGNTNNGSGGNNNNLTGYIFSP 622
            ..:|                         ..|.|.:|:.                        .|
plant   429 LKDH-------------------------QSRSRNSSDQ------------------------QP 444

  Fly   623 LKFENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEANATSSSKSSTPLPTSASHDVNPSSMRKS 687
            ....::|||:...|:..||.:::.|                     :| |:|....:....:..:
plant   445 QVHVDALGKITLPSICRPRALLEVD---------------------SP-PSSGHKHLEDEPLVAA 487

  Fly   688 RHILLLIETLYRYLLKLEDLESPEVMATIELKKKKEAERIAALEQLEMANKTPEERAAEAANPQT 752
            |   :.||..:..|:.:.|:                                  :|..:...||.
plant   488 R---VTIEDAFGVLIDIVDI----------------------------------DRTLQFNRPQD 515

  Fly   753 MNPQLKNKFNYEVE---TKAALVNKL-----KAGLAFDKVIAMMNVR---KG-KILIRRIMPFIA 805
            ...||:.|....:|   |...||:..     |.||.....|..:.:.   || |:|.:.:...:.
plant   516 GGAQLRRKRQILLEGLATSLQLVDPFSKTGQKTGLTTKDDIVFLRITTLPKGRKLLTKYLQLLVP 580

  Fly   806 DQSIRWVVWSGVFCSLQTVVKKDKDDVEGVLYALYPEFKKHVNKATFELLVSISSAITL----ND 866
            ...|..||...||..|:            .|:...|.     :....|.:.:::.|:|:    .|
plant   581 GTEIARVVCMAVFRHLR------------FLFGGLPS-----DSLAAETIANLAKAVTVCVQAMD 628

  Fly   867 KK-----LAGIFCSR-------FGILS-------LVALILRAEEIYVSRTDATLSEE---NRQKW 909
            .:     ||.:.||.       .|..|       ||:|:.||.|:.|:.....:|..   |...|
plant   629 LRALSACLAAVVCSSEQPPLRPIGSSSGDGASVVLVSLLERAAEVIVAVVPPRVSNHGNPNDGLW 693

  Fly   910 REFLAQVASCLNR-------TIQNQ 927
            |....:..|.|.:       ||..|
plant   694 RASFDEFFSLLTKYCRSKYETIHGQ 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Patr-1NP_001287369.1 PAT1 <334..>589 CDD:286811 46/271 (17%)
AT4G14990NP_567452.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21551
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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