DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patr-1 and AT3G22270

DIOPT Version :9

Sequence 1:NP_001287369.1 Gene:Patr-1 / 42058 FlyBaseID:FBgn0266053 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_188866.1 Gene:AT3G22270 / 821797 AraportID:AT3G22270 Length:782 Species:Arabidopsis thaliana


Alignment Length:1041 Identity:180/1041 - (17%)
Similarity:302/1041 - (29%) Gaps:417/1041 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 YDALNDETFGSAINGDWEEAHETMVRLGGNGERVRKRPAESSGNTD---FADQGNGAFLRHANPL 88
            :||...|.||..:: |.|        |||..:.....|.....:.|   ..|:|.||.|...:.:
plant    25 FDASQYEFFGQNLD-DME--------LGGLDDDGVIAPVLGHADDDEYHLFDKGEGAGLGSLSDM 80

  Fly    89 SSAPSSSGSTPAPLNAPFRQSRH---IGDSDLELNISSMKLDDMDLSSFTTDSEAGGLSNRIKLD 150
            ...    .:|.|.||......:|   |||.    ...|...:....:.:|.|:|.....:....:
plant    81 DDL----ATTFAKLNRVVTGPKHPGVIGDR----GSGSFSRESSSATDWTQDAELTSWLDEQDQE 137

  Fly   151 SGVWGSQP--FPNNQHLFREPMRSAFKPQQQQHQQHQPQQMKPPQEANANFALNPQPFPKITTLE 213
            :..|.|||  |.:::.|:    |::..||||...||                .|.:|.       
plant   138 AKRWSSQPQSFAHSKPLY----RTSSYPQQQPQLQH----------------YNSEPI------- 175

  Fly   214 DIERNMIIQQAIPKQQQQSQQQAERKMFDDFSLGNRQQVPTPTMLQQQMLQQQHHQKQQSQQQPP 278
                      .:|:....|                                              
plant   176 ----------ILPESNFTS---------------------------------------------- 184

  Fly   279 QQAQHKVPPGFLGTPHTSPPRPNLGFPGPELLPTPSSQQQLNGIGGNRVPPGFIYPQGLPGNIPQ 343
                                     ||                      |||...||..|||:.:
plant   185 -------------------------FP----------------------PPGNRSPQASPGNLHR 202

  Fly   344 LPQHPLMQQHMPHNFPLPGGNQRPLPNPQALPTA---LNNFAMHPSF--NAMRAAGIHP--GAFM 401
            .|.             ||||:|.....|..|..:   |:..:..|.:  |..|.|...|  |..:
plant   203 APS-------------LPGGSQLTYSAPSPLSNSGFHLSGLSQGPHYGGNLTRYASCGPTLGNMV 254

  Fly   402 QP---------------------PHPHQMLPPRMPPHPLQAATSLLGQQPPNSMYNMFNMRLVQE 445
            ||                     ...||.||||         .:::.|.             :..
plant   255 QPHWVTDPGHLHGDHSGLLHNLVQQQHQQLPPR---------NAIMSQH-------------LLA 297

  Fly   446 IQQNHPLLQQAAVVRQMQQS----------RAGSVASDRQRSQAQQQQQGRRPDGTGNYPLEEYD 500
            :||.....|.||:..|:..|          ..|.|...:.:|    ..:.|:..|......:...
plant   298 LQQRQSYAQLAALQSQLYSSYPSPSRKVPFGVGEVREHKHKS----SHRSRKNRGLSQQTSDAAS 358

  Fly   501 EYANL-MSTRDKHW-------LIGIQLSQLNTDTPYIDDYYYTVFRERKAQQNGQMRNSQAHKDN 557
            :.:.. :..|.||.       ::.:|.|..:::.||::|||:.....:|:.  |....|..:...
plant   359 QKSETGLQFRSKHMTSEEIESILKMQHSNSHSNDPYVNDYYHQAKLAKKSA--GSKAISHFYPAQ 421

  Fly   558 QLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNSTSGNTNNGSGGNNNNLTGYIFSP 622
            ..:|   |||.                       |||...:                       |
plant   422 LKDH---QPRS-----------------------RNSSEQH-----------------------P 437

  Fly   623 LKFENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEANATSSSKSSTPLPTSASHDVNPSSMRKS 687
            ....::|||:...||..|..:::.|...|.::.:.:...:.......||..:.            
plant   438 QVHVDALGKITLPSVRRPHALLEVDSSPGFNDGSGDHKGSGKHLEQEPLVAAR------------ 490

  Fly   688 RHILLLIETLYRYLLKLEDLESPEVMATIELKKKKEAERIAALEQLEMANKTPEERAAEAANPQT 752
                :.||.....|:.:.|:                                  :|..:...||.
plant   491 ----VTIEDALGVLIDIVDI----------------------------------DRTLQNTRPQD 517

  Fly   753 MNPQLKNKFNYEVETKAALVNKL--------KAGLAFDKVIAMMNVR---KGKILIRRIMPFI-- 804
            ...|||.|....:|..|..:...        |:|:.....|..:.:.   ||:.|:.:.:..:  
plant   518 GGAQLKRKRQILLEGLATALQLADPFSKTGQKSGMTAKDDIVFLRIATLPKGRKLLTKYLQLLVP 582

  Fly   805 ADQSIRWVVWSGVFCSLQTVVKKDKDDVEGVLYALYPEFKKHVNKATFELLVSISSAITL----N 865
            ..::.| ||...:|..|:            .|:...|.     :....|.:.:::.|:|:    .
plant   583 GTENAR-VVCMAIFRHLR------------FLFGGLPS-----DTLAAETISNLAKAVTVCVQAM 629

  Fly   866 DKK-----LAGIFCSR--------------FGILSLVALILRAEEIYVSRTDATLSEENRQKWRE 911
            |.:     ||.:.||.              ...:.|::|:.||.|:.|. ........|...||.
plant   630 DLRALSACLAAVVCSSEQPPLRPIGSSAGDGASVVLISLLERAAEVVVV-PRVMHGNSNDGLWRA 693

  Fly   912 FLAQVASCLNR-------TI--QNQTISAAIESDAIQPLMDHFERFKDLKLDALLALITEARHQI 967
            ...:..:.|.:       ||  |||..:|.:...||:         :::..:.|.|.:   ||..
plant   694 SFDEFFNLLTKYCRSKYDTIRGQNQGSAADVLELAIK---------REMPAELLRASL---RHTN 746

  Fly   968 D 968
            |
plant   747 D 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Patr-1NP_001287369.1 PAT1 <334..>589 CDD:286811 58/300 (19%)
AT3G22270NP_188866.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21551
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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