Sequence 1: | NP_001287369.1 | Gene: | Patr-1 / 42058 | FlyBaseID: | FBgn0266053 | Length: | 968 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001101990.1 | Gene: | Patl1 / 361736 | RGDID: | 1305514 | Length: | 770 | Species: | Rattus norvegicus |
Alignment Length: | 1032 | Identity: | 235/1032 - (22%) |
---|---|---|---|
Similarity: | 372/1032 - (36%) | Gaps: | 346/1032 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 DDSFFGFDTNLPDEDGGDGRIVEAEYDALNDETFGS-AINGDWEEAHETMVRLGGNGERVRKRPA 65
Fly 66 ESSGNTDFADQGNGAFLRHANPLSSAPSSSGSTPAPLNAPFRQSRHIGDSDLELNISSMKLDDMD 130
Fly 131 LSSFTTDSEAGGLSNRI-------------------------KLDSGVW-GSQPFPNNQHLFREP 169
Fly 170 MRSAFKPQQQQHQQHQPQQMKPPQEANANFALNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQ 234
Fly 235 QAERKMFDDFSLGN-RQQVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPP 298
Fly 299 RPN---LGFPGPELLP---TPSSQQQLNGIGGNRVPPGFIYPQ---GLPGNIPQLPQHPLMQQHM 354
Fly 355 PHNFPLPGGNQRPLPN--PQALPTALNNFAMHPSFNAMRAAGIHPGAFMQPPHPHQMLPPRMPPH 417
Fly 418 PLQAATSLLGQQPPNSMYNMFNMRLVQEIQQNHPLLQQAAVVRQMQ---QSRAGSVASDRQRSQA 479
Fly 480 QQQQQGRRPDGTGNYPLEEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRERKAQQ 544
Fly 545 NGQMRNSQAHKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNSTSGNTNNGSG 609
Fly 610 GNNNNLTGYIFSPLKFENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEANATSSSKSSTPLPTS 674
Fly 675 ASHDVNPSSMR---KSRHILLLIETLYRYLLKLEDLESPEVMATIELKKKKEAERIAALEQLE-- 734
Fly 735 -------MANKTP-EERAAEAANPQTMNPQLKNKFNYEVETKAALVNKLKAGLAFDKVIAMMNVR 791
Fly 792 KGKILIRRIMPFIADQSIRWVVWSGVFCSLQTVVKKD-KDDVEGVLYALYPEFKKHVNKAT---- 851
Fly 852 FELLVSISSAITL---NDKKLAGIFCSRFGILSLVALILRAEEIYVSRTDATLSEENRQKWREFL 913
Fly 914 AQVASCLNRTIQNQTISAAIESDAIQP--LMDHFERFKDLK----LDALLALITEAR 964 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Patr-1 | NP_001287369.1 | PAT1 | <334..>589 | CDD:286811 | 70/262 (27%) |
Patl1 | NP_001101990.1 | Involved in nuclear foci localization. /evidence=ECO:0000250 | 1..397 | 121/525 (23%) | |
Region A, interaction with DDX6/RCK. /evidence=ECO:0000250 | 1..84 | 32/135 (24%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..42 | 14/37 (38%) | |||
ASF1_hist_chap | <8..104 | CDD:304562 | 35/155 (23%) | ||
Region N, interaction with decapping machinery. /evidence=ECO:0000250 | 85..388 | 88/379 (23%) | |||
Nuclear export signal. /evidence=ECO:0000250 | 86..95 | 3/8 (38%) | |||
Involved in RNA-binding. /evidence=ECO:0000250 | 223..397 | 59/217 (27%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 320..341 | 9/27 (33%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 369..394 | 6/24 (25%) | |||
Region H. /evidence=ECO:0000250 | 389..448 | 24/77 (31%) | |||
Involved in nuclear spleckles localization. /evidence=ECO:0000250 | 398..770 | 112/503 (22%) | |||
Region C. /evidence=ECO:0000250 | 449..770 | 90/433 (21%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166341506 | |
Domainoid | 1 | 1.000 | 75 | 1.000 | Domainoid score | I8877 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4592 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 115 | 1.000 | Inparanoid score | I4737 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D404416at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002413 | |
OrthoInspector | 1 | 1.000 | - | - | otm44907 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_108520 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR21551 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
12 | 11.800 |