DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patr-1 and Patl1

DIOPT Version :9

Sequence 1:NP_001287369.1 Gene:Patr-1 / 42058 FlyBaseID:FBgn0266053 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_001101990.1 Gene:Patl1 / 361736 RGDID:1305514 Length:770 Species:Rattus norvegicus


Alignment Length:1032 Identity:235/1032 - (22%)
Similarity:372/1032 - (36%) Gaps:346/1032 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DDSFFGFDTNLPDEDGGDGRIVEAEYDALNDETFGS-AINGDWEEAHETMVRLGGNGERVRKRPA 65
            :|:|.|    |.:||        .|.|..||:|||| |::.||:||||.:..|      ..|.|.
  Rat    16 EDAFQG----LGEED--------EEIDQFNDDTFGSGAVDDDWQEAHERLAEL------EEKLPV 62

  Fly    66 ESSGNTDFADQGNGAFLRHANPLSSAPSSSGSTPAPLNAPFRQSRHIGDSDLELNISSMKLDDMD 130
            .:...|     |||                                             :.|:||
  Rat    63 AADEQT-----GNG---------------------------------------------ERDEMD 77

  Fly   131 LSSFTTDSEAGGLSNRI-------------------------KLDSGVW-GSQPFPNNQHLFREP 169
            |.....::.|..||..:                         .|:|.:| ||:..    ...|.|
  Rat    78 LLGDHEENLAERLSKMVIENELEDPAVMRAVQTRPVLQPQPGSLNSSIWDGSEVL----RRIRGP 138

  Fly   170 MRSAFKPQQQQHQQHQPQQMKPPQEANANFALNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQ 234
            :.:...|.....:...||  :|||....:..|:.:..|:.:|...|....:  :|:|        
  Rat   139 LLAQEMPTVSVLEYALPQ--RPPQGPEDDRDLSERALPRRSTSPIIGSPPV--RAVP-------- 191

  Fly   235 QAERKMFDDFSLGN-RQQVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPP 298
                       :|. .:|:..|:..||.:..:..|.:      ||...::..|.|...:|:....
  Rat   192 -----------IGTPPKQMAVPSFNQQILCPKPVHVR------PPMPPRYPAPYGERMSPNQLCS 239

  Fly   299 RPN---LGFPGPELLP---TPSSQQQLNGIGGNRVPPGFIYPQ---GLPGNIPQLPQHPLMQQHM 354
            .||   ||.|.|..:|   :|..:.||  :||.::.||.:.|.   .:||.:             
  Rat   240 VPNSSLLGHPFPPSVPPVLSPLQRAQL--LGGAQLQPGRMSPSQFARVPGFV------------- 289

  Fly   355 PHNFPLPGGNQRPLPN--PQALPTALNNFAMHPSFNAMRAAGIHPGAFMQPPHPHQMLPPRMPPH 417
              ..||...|.:.|..  .|.||.|       |.|.|..:|   |.....||..|   ||...||
  Rat   290 --GSPLAAMNPKLLQGRVGQMLPPA-------PGFRAFFSA---PPPATPPPQQH---PPGPGPH 339

  Fly   418 PLQAATSLLGQQPPNSMYNMFNMRLVQEIQQNHPLLQQAAVVRQMQ---QSRAGSVASDRQRSQA 479
             ||   :|..|.|      ||.........|:..||.|    ||:|   |.|..:...||...:.
  Rat   340 -LQ---NLRPQAP------MFRPDTTHLHPQHRRLLHQ----RQLQSRNQHRNLNGTGDRGGHRV 390

  Fly   480 QQQQQGRRPDGTGNYPLEEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRERKAQQ 544
            ..|...|:            |.|||||..|:|.|:..||:.||.:..||:||:||..:.|:    
  Rat   391 SHQDHLRK------------DPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEK---- 439

  Fly   545 NGQMRNSQAHKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNSTSGNTNNGSG 609
               :..|.|.::.|.:.|   .:...:||..|:....                            
  Rat   440 ---LEKSSAAEEMQGDGP---KKERTKLITPQVARLE---------------------------- 470

  Fly   610 GNNNNLTGYIFSPLKFENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEANATSSSKSSTPLPTS 674
                    :.:.|::||.|||||...||..|||:|||.:                        ||
  Rat   471 --------HAYKPVQFEGSLGKLTVSSVNNPRKMIDAVV------------------------TS 503

  Fly   675 ASHDVNPSSMR---KSRHILLLIETLYRYLLKLEDLESPEVMATIELKKKKEAERIAALEQLE-- 734
            .|.|......:   |.|..|::||..|..||.:||.|...:::.       |.||.|..::.:  
  Rat   504 RSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSL-------EEERPALTDERKHK 561

  Fly   735 -------MANKTP-EERAAEAANPQTMNPQLKNKFNYEVETKAALVNKLKAGLAFDKVIAMMNVR 791
                   :..|.| :||.::                                   |..:.:|.:|
  Rat   562 IWSMYDNLRGKLPGQERPSD-----------------------------------DHFVQIMCIR 591

  Fly   792 KGKILIRRIMPFIADQSIRWVVWSGVFCSLQTVVKKD-KDDVEGVLYALYPEFKKHVNKAT---- 851
            |||.::.||:||::.:....::.: ...:|..::||| :|:|...|.:.:.....|:...|    
  Rat   592 KGKRMVARILPFLSTEQAADILMA-TARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSL 655

  Fly   852 FELLVSISSAITL---NDKKLAGIFCSRFGILSLVALILRAEEIYVSRTDATLSEENRQKWREFL 913
            .:.|:::..:.|.   ::..|..:..::||:..|:.|:.|.|:::.|  |.|:......:|.|.:
  Rat   656 LQQLMNLPQSATAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLHSS--DPTVESTQNNQWTEVM 718

  Fly   914 AQVASCLNRTIQNQTISAAIESDAIQP--LMDHFERFKDLK----LDALLALITEAR 964
            ......|.|..|     ||:......|  |:..|.|:.|.:    |:..|.|:...|
  Rat   719 FMATQELLRIPQ-----AALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGMR 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Patr-1NP_001287369.1 PAT1 <334..>589 CDD:286811 70/262 (27%)
Patl1NP_001101990.1 Involved in nuclear foci localization. /evidence=ECO:0000250 1..397 121/525 (23%)
Region A, interaction with DDX6/RCK. /evidence=ECO:0000250 1..84 32/135 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..42 14/37 (38%)
ASF1_hist_chap <8..104 CDD:304562 35/155 (23%)
Region N, interaction with decapping machinery. /evidence=ECO:0000250 85..388 88/379 (23%)
Nuclear export signal. /evidence=ECO:0000250 86..95 3/8 (38%)
Involved in RNA-binding. /evidence=ECO:0000250 223..397 59/217 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 320..341 9/27 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 369..394 6/24 (25%)
Region H. /evidence=ECO:0000250 389..448 24/77 (31%)
Involved in nuclear spleckles localization. /evidence=ECO:0000250 398..770 112/503 (22%)
Region C. /evidence=ECO:0000250 449..770 90/433 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341506
Domainoid 1 1.000 75 1.000 Domainoid score I8877
eggNOG 1 0.900 - - E1_KOG4592
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 115 1.000 Inparanoid score I4737
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D404416at33208
OrthoFinder 1 1.000 - - FOG0002413
OrthoInspector 1 1.000 - - otm44907
orthoMCL 1 0.900 - - OOG6_108520
Panther 1 1.100 - - LDO PTHR21551
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.800

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