DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patr-1 and PATL1

DIOPT Version :9

Sequence 1:NP_001287369.1 Gene:Patr-1 / 42058 FlyBaseID:FBgn0266053 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_689929.2 Gene:PATL1 / 219988 HGNCID:26721 Length:770 Species:Homo sapiens


Alignment Length:1023 Identity:244/1023 - (23%)
Similarity:382/1023 - (37%) Gaps:328/1023 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DDSFFGFDTNLPDEDGGDGRIVEAEYDALNDETFGS-AINGDWEEAHETMVRL-----------G 54
            :|:|.|    |.:||        .|.|..||:|||| |::.||:||||.:..|           .
Human    16 EDAFQG----LGEED--------EEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAVNEQT 68

  Fly    55 GNGERVRKRPAESSGNTDFAD-QGNGAFLRHANPLSSAPSSSGSTPAPLNAPFRQSRHIGDSDLE 118
            |||||            |..| .|:     |...|:.                |.|:.:.:::||
Human    69 GNGER------------DEMDLLGD-----HEENLAE----------------RLSKMVIENELE 100

  Fly   119 LNISSMKLDDMDLSSFTT----DSEAGGLSNRIKLDSGVW-GSQPFPNNQHLFREPMRSAFKPQQ 178
                    |...:.:..|    ..:.|      .|:|.:| ||:..    ...|.|:.:...|..
Human   101 --------DPAIMRAVQTRPVLQPQPG------SLNSSIWDGSEVL----RRIRGPLLAQEMPTV 147

  Fly   179 QQHQQHQPQQMKPPQEANANFALNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQQAERKMFDD 243
            ...:...||  :|||....:..|:.:..|:.:|...|....:  :|:|                 
Human   148 SVLEYALPQ--RPPQGPEDDRDLSERALPRRSTSPIIGSPPV--RAVP----------------- 191

  Fly   244 FSLGN-RQQVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPPRPN---LGF 304
              :|. .:|:..|:..||.:..:..|.:      ||...::..|.|...:|:.....||   ||.
Human   192 --IGTPPKQMAVPSFTQQILCPKPVHVR------PPMPPRYPAPYGERMSPNQLCSVPNSSLLGH 248

  Fly   305 PGPELLP---TPSSQQQLNGIGGNRVPPGFIYPQ---GLPGNIPQLPQHPLMQQHMPHNFPLPGG 363
            |.|..:|   :|..:.||  :||.::.||.:.|.   .:||.:               ..||...
Human   249 PFPPSVPPVLSPLQRAQL--LGGAQLQPGRMSPSQFARVPGFV---------------GSPLAAM 296

  Fly   364 NQRPLPN--PQALPTALNNFAMHPSFNAMRAAGIHPGAFMQPPHPHQMLPPRMPPHPLQAATSLL 426
            |.:.|..  .|.||.|       |.|.|..:|   |.:...||..|   ||...|| ||   :|.
Human   297 NPKLLQGRVGQMLPPA-------PGFRAFFSA---PPSATPPPQQH---PPGPGPH-LQ---NLR 344

  Fly   427 GQQPPNSMYNMFNMRLVQEIQQNHPLLQQAAVVRQMQ---QSRAGSVASDRQRSQAQQQQQGRRP 488
            .|.|      ||.........|:..||.|    ||.|   |.|..:.|.||...::..|...|: 
Human   345 SQAP------MFRPDTTHLHPQHRRLLHQ----RQQQNRSQHRNLNGAGDRGSHRSSHQDHLRK- 398

  Fly   489 DGTGNYPLEEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRERKAQQNGQMRNSQA 553
                       |.|||||..|:|.|:..||:.||.:..||:||:||..:.|:       :....|
Human   399 -----------DPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEK-------LEKLSA 445

  Fly   554 HKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNSTSGNTNNGSGGNNNNLTGY 618
            .::.|.:.|   .:...:||..|:....                                    :
Human   446 AEEIQGDGP---KKERTKLITPQVAKLE------------------------------------H 471

  Fly   619 IFSPLKFENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEANATSSSKSSTPLPTSASHDVNPSS 683
            .:.|::||.|||||...||..|||:|||.:                        ||.|.|.....
Human   472 AYKPVQFEGSLGKLTVSSVNNPRKMIDAVV------------------------TSRSEDDETKE 512

  Fly   684 MR---KSRHILLLIETLYRYLLKLEDLESPEVMATIELKKKKEAERIAALEQLE---------MA 736
            .:   |.|..|::||..|..||.:||.|...:::.       |.||.|.::..:         :.
Human   513 KQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSL-------EEERPALMDDRKHKICSMYDNLR 570

  Fly   737 NKTP-EERAAEAANPQTMNPQLKNKFNYEVETKAALVNKLKAGLAFDKVIAMMNVRKGKILIRRI 800
            .|.| :||.::                                   |..:.:|.:||||.::.||
Human   571 GKLPGQERPSD-----------------------------------DHFVQIMCIRKGKRMVARI 600

  Fly   801 MPFIADQSIRWVVWSGVFCSLQTVVKKD-KDDVEGVLYALYPEFKKHVNKATF-----ELLVSIS 859
            :||::.:....::.: ...:|..::||| :|:|...|.:.:.....|:...:.     :|:....
Human   601 LPFLSTEQAADILMT-TARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQ 664

  Fly   860 SAIT--LNDKKLAGIFCSRFGILSLVALILRAEEIYVSRTDATLSEENRQKWREFLAQVASCLNR 922
            ||.|  |::..|..:..::||:..|:.|:.|.|::. |...||.|.:|.| |.|.:......|.|
Human   665 SAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQ-SSDPATESTQNNQ-WTEVMFMATRELLR 727

  Fly   923 TIQNQTISAAIESDAIQP--LMDHFERFKDLK----LDALLALITEAR 964
            ..|     ||:......|  |:..|.|:.|.:    |:..|.|:...|
Human   728 IPQ-----AALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Patr-1NP_001287369.1 PAT1 <334..>589 CDD:286811 70/262 (27%)
PATL1NP_689929.2 Involved in nuclear foci localization 1..397 126/516 (24%)
Region A, interaction with DDX6/RCK 1..84 31/96 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26 4/13 (31%)
Region N, interaction with decapping machinery 85..388 94/409 (23%)
Nuclear export signal 86..95 3/24 (13%)
Involved in RNA-binding 223..397 60/217 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 314..344 13/39 (33%)
PAT1 <341..>613 CDD:286811 95/408 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 360..399 14/54 (26%)
Region H 389..448 23/77 (30%)
Involved in nuclear spleckles localization 398..770 116/503 (23%)
Region C 449..770 95/433 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147678
Domainoid 1 1.000 76 1.000 Domainoid score I8953
eggNOG 1 0.900 - - E1_KOG4592
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 112 1.000 Inparanoid score I4862
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D404416at33208
OrthoFinder 1 1.000 - - FOG0002413
OrthoInspector 1 1.000 - - oto89097
orthoMCL 1 0.900 - - OOG6_108520
Panther 1 1.100 - - LDO PTHR21551
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R889
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.790

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