DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patr-1 and patl1

DIOPT Version :9

Sequence 1:NP_001287369.1 Gene:Patr-1 / 42058 FlyBaseID:FBgn0266053 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_001076497.1 Gene:patl1 / 100009659 ZFINID:ZDB-GENE-070209-83 Length:765 Species:Danio rerio


Alignment Length:1037 Identity:235/1037 - (22%)
Similarity:362/1037 - (34%) Gaps:383/1037 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDSFFGFDTNLPDEDGGDGRIVEA--EYDALNDETFGS-AINGDWEEAHETMVRLGGNGERVRK 62
            :||     |..|.:|:|    :||.  |.|..||:|||: ||:.||:|.|   .||....||||.
Zfish     7 LDD-----DCTLEEEEG----LVEEEDEIDQFNDDTFGAGAIDDDWQEEH---TRLAELDERVRD 59

  Fly    63 RPAESSGNTDFADQGNGAFLRHANPLSSAPSSSGSTPAPLNAPFRQSRHIGDSDLELNISSMKLD 127
             ....:|::|.:..|:.|   |::.|....|||...|                            
Zfish    60 -VLPGAGDSDTSHGGSNA---HSSVLPPPSSSSRLYP---------------------------- 92

  Fly   128 DMDLSSFTTDSEAGGLSNRIKLDSGVWGSQP--------FPNNQHLFREPMRSAFKP-------- 176
            |:|        |.||......|...:.||.|        ..:..||  .||.||..|        
Zfish    93 DID--------ERGGGDLAESLTRLILGSDPAIAGVGSTSSDRSHL--PPMLSAHPPHPSALAGP 147

  Fly   177 -----QQQQHQQHQPQQMKPPQEANANFAL-NPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQQ 235
                 ..|||||...:...|..:.|::... |...|..::    :...:|         .|.:.:
Zfish   148 SSLLRSYQQHQQFLHRGPAPLSQINSHSIWENSMGFSPVS----VNSGLI---------GQKEDK 199

  Fly   236 AERKMFDDFSLGNRQQVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPPRP 300
            ....:..:..|.||    .|::.:.:                .:....:|||     |.:|.|  
Zfish   200 TLLSIIKEVGLPNR----PPSLSRDE----------------GRDLSERVPP-----PRSSSP-- 237

  Fly   301 NLGFPGPELLPTPSSQQQLNGIGGNRVPPGFIYPQGLPGNIPQLPQHPLMQQ--------HMPHN 357
                                .||.   ||....|.|.|   |:.|...::.|        |:..:
Zfish   238 --------------------VIGS---PPVRAVPIGTP---PKQPMSQILNQQNNHPSAIHVRAS 276

  Fly   358 FPLPGGNQRPLPNPQAL-PTALNNFAMHPSFNAMRAAGIHP---------------GAFMQPPHP 406
            .|:    :.|.|.|:.| |..|.:.|..|..::...||::|               |.|.:.|.|
Zfish   277 VPM----RFPPPFPERLSPNNLLSIAKSPLSHSPFPAGVNPVLSQIQRAQLLNSQVGQFQRGPAP 337

  Fly   407 HQM-------------LPPRMPPH--PLQAATSLLGQQPPNSMYNMFNMRLVQEIQQN----HPL 452
            ..:             ..||:.||  |       ||..|               |:.|    || 
Zfish   338 PLLQGGVGGFRPFFGQSGPRIGPHGPP-------LGHAP---------------IRHNTTHLHP- 379

  Fly   453 LQQAAVVRQMQQSRAGSVASDRQRSQAQQQQQGRRPDGTGNYPLEEYDEYANLMSTRDKHWLIGI 517
             |...::.|..|:|...|.                  |.|....:..|.|:|||:.|:|.|:..|
Zfish   380 -QHRRMLSQRMQNRGDHVG------------------GRGVGERKNRDPYSNLMTQREKEWVAKI 425

  Fly   518 QLSQLNTDTPYIDDYYYTVFRERKAQQNGQMRNSQAHKDNQLNHPLTQPRGHAQLILVQLGNKNG 582
            |:.||.:..||:|||||..:.|:      ..:..:..:||:..|.       .:||..|:.....
Zfish   426 QMMQLQSTDPYLDDYYYQNYYEK------MEKRQERDRDNRKEHT-------TKLITPQVAKLEH 477

  Fly   583 TRNGHGRERRNSENTNSTSGNTNNGSGGNNNNLTGYIFSPLKFENSLGKLQYGSVTAPRKIIDAD 647
            |                                    :.|::|..|||||...||..|||:|||.
Zfish   478 T------------------------------------YRPVQFAGSLGKLTVSSVNNPRKMIDAV 506

  Fly   648 IMSGESNAAAEANATSSSKSSTPLPTSASHDVNPSSMR---KSRHILLLIETLYRYLLKLEDLES 709
            :                        ||.|.|......:   |.|.||..:|.:|..||:::|.|.
Zfish   507 V------------------------TSRSDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEK 547

  Fly   710 PEVMATIELKKKKEAERIAALEQLEMANKTPEERAAEAANPQTMNPQLKNKFNYEVETKAALVNK 774
                   :..:..|.:|...|||    :||           .|:.                |.|.
Zfish   548 -------KFLQTPEHQRDVLLEQ----HKT-----------HTLQ----------------LYNS 574

  Fly   775 LKAGLAFDKV-----IAMMNVRKGKILIRRIMPFIADQSIRWVVWSGVFCSLQTVVKKDKDDVEG 834
            |:.....|:|     :.:|:|||||.||.|::||:.......|| .|:..:|..:.||||.| :.
Zfish   575 LREKEWDDRVSDEQCLMIMSVRKGKRLISRLLPFLPQPQAAAVV-MGIARNLPALAKKDKQD-QV 637

  Fly   835 VLYALYPEFKKHVNKATFELLVSISSAITLND--KKLAG-------IFCSRFGILSLVALILRAE 890
            :.:.:.|          ..:::...|:.:|.|  ::|.|       :..::||:..|..::...|
Zfish   638 LCWLVEP----------VSVVIQSMSSTSLTDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGE 692

  Fly   891 EIYVSRTDATLSEENRQKWREFLAQVASCLNRTIQNQTISAAIESDAIQP--LMDHFERFKD 950
            .:..|..:..|.::||  |.|.:..|...|.:     ..|:|:.|....|  |:..|.|:.|
Zfish   693 RMQSSDPNCQLMDDNR--WTELVFSVTRELLK-----VPSSALSSPLFTPPNLVSLFSRYVD 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Patr-1NP_001287369.1 PAT1 <334..>589 CDD:286811 69/297 (23%)
patl1NP_001076497.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..98 40/142 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..147 7/29 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..244 13/83 (16%)
PAT1 <245..>628 CDD:286811 126/543 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581505
Domainoid 1 1.000 68 1.000 Domainoid score I9749
eggNOG 1 0.900 - - E1_KOG4592
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 111 1.000 Inparanoid score I4852
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D404416at33208
OrthoFinder 1 1.000 - - FOG0002413
OrthoInspector 1 1.000 - - otm24517
orthoMCL 1 0.900 - - OOG6_108520
Panther 1 1.100 - - LDO PTHR21551
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R889
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.790

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