DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5220 and AT5G01230

DIOPT Version :9

Sequence 1:NP_650590.1 Gene:CG5220 / 42056 FlyBaseID:FBgn0038471 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_851026.1 Gene:AT5G01230 / 830268 AraportID:AT5G01230 Length:309 Species:Arabidopsis thaliana


Alignment Length:304 Identity:154/304 - (50%)
Similarity:194/304 - (63%) Gaps:53/304 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY- 64
            |||.|:||||||||:||:||||||||||||.:||.:.|..||:|.||||||||||||||||:|| 
plant     1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLYL 65

  Fly    65 ---DTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGA 126
               .:.|:.|....: |:|:|||.||||.|::|:|||||...|||.:|.||.|. ||.|||||||
plant    66 PAKSSAESKDGDLPL-IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-KADLVVCDGA 128

  Fly   127 PDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPP 191
            |||||:|:|||::|.||::|.|:|.|.:|:.||.|:||||:|..||||..|:::||......||.
plant   129 PDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFFPTVTFAKPK 193

  Fly   192 SSRPSSIEAFVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGSE---------------VNRRLV 241
            |||.||||||.||.::..|||:.|:       |:..|.:|.||.               .|:..:
plant   194 SSRNSSIEAFAVCENYSPPEGFNPR-------DLHRLLEKVGSPSGGSDLDCSSGWLEGPNKVYI 251

  Fly   242 PFIACGDLNGLSDPEEGKTSSSDESKSNLEYVYDAVMDDASYPL 285
            ||:|||||.|                      ||:   |.||||
plant   252 PFLACGDLTG----------------------YDS---DRSYPL 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5220NP_650590.1 RlmE 3..211 CDD:223370 127/211 (60%)
AT5G01230NP_851026.1 RlmE 5..213 CDD:223370 126/209 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 221 1.000 Domainoid score I717
eggNOG 1 0.900 - - E1_COG0293
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5372
Inparanoid 1 1.050 278 1.000 Inparanoid score I882
OMA 1 1.010 - - QHG54241
OrthoDB 1 1.010 - - D1362679at2759
OrthoFinder 1 1.000 - - FOG0004400
OrthoInspector 1 1.000 - - oto3648
orthoMCL 1 0.900 - - OOG6_102125
Panther 1 1.100 - - LDO PTHR10920
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3115
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.880

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