DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18213 and smyd4

DIOPT Version :10

Sequence 1:NP_650589.2 Gene:CG18213 / 42055 FlyBaseID:FBgn0038470 Length:879 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:169 Identity:40/169 - (23%)
Similarity:60/169 - (35%) Gaps:40/169 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KVQTENFVPFKGFKLTRK--IPFASQACDYSEKSIEKSG------GVFASCD----------VPK 250
            |:||.........:...|  ||.........:|::..:|      .|:.|.|          .|.
Zfish   144 KLQTRQTACQNQLRKAEKPNIPHTDHQLSPCQKTVNSTGHLSDGVSVYFSSDKGRHMLVMENKPA 208

  Fly   251 GEIVLVE-----------------NPVYFQFSAPFLNCELCGVHQQQLYTCDNCRYRSYCSKSCM 298
            ||:||.:                 |.....|.....:|..|.........|..|.|..||.:||.
Zfish   209 GEVVLEDEAYCSVLIPANIFNTGTNKAVETFGTEDRHCHHCLSQSLSFVPCPKCSYARYCGESCQ 273

  Fly   299 KSDA--EVHQYEC-YGYKIGLIPMLEANMLFRLFCEAGE 334
            | ||  :.||:|| .|..:..|.:| .::..|:..:||:
Zfish   274 K-DAWDQWHQWECPVGADLLAIGVL-GHLALRVVLKAGQ 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18213NP_650589.2 None
smyd4NP_001070062.1 NlpI <65..>134 CDD:443815
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:460312 14/39 (36%)
SET_SMYD4 <352..556 CDD:380934
TPR_12 621..683 CDD:315987
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.