DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4009 and Lpo

DIOPT Version :9

Sequence 1:NP_001262655.1 Gene:CG4009 / 42054 FlyBaseID:FBgn0038469 Length:649 Species:Drosophila melanogaster
Sequence 2:XP_006247147.1 Gene:Lpo / 287610 RGDID:1310051 Length:710 Species:Rattus norvegicus


Alignment Length:610 Identity:183/610 - (30%)
Similarity:271/610 - (44%) Gaps:78/610 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 PPRNCLNDTRNLHYRTLDGSCNNLLYPEFGIAVSRYRRLLP-----------------PRQVEQA 129
            ||...:....:..|||:.|.|||...|..|.|.....|.||                 .|.....
  Rat   123 PPAPAVTCNISNPYRTITGDCNNRKNPALGSANRALARWLPAEYEDGLSLPFGWTPGKTRNGYPL 187

  Fly   130 PNARLISLSLYG---EQTRNDRFRTMAAMQWGQFVAHDI-----SQLSTQGAPQDCCAEP--RHP 184
            |..|.:|..:.|   |:...|:.|::..|||||.|.||:     :::.|....:..|.|.  :..
  Rat   188 PQPREVSNQIAGYLNEEDVLDQKRSVLFMQWGQIVDHDLDFAPDTEMGTDNYTKAQCDEHCIQGD 252

  Fly   185 RCLPINLPRGGPIAYHTGKTCLHFARSVSDADAIC--PKVEEPQPEKLTVATAYLDLSSIYGNNP 247
            .|.||..|.|.|.....|| |:.|.|    |..:|  |..:....|::...|::||.|.:|...|
  Rat   253 NCFPIMFPTGDPKLKTQGK-CMSFFR----AGFVCPTPPYQSLTREQINALTSFLDASLVYSPEP 312

  Fly   248 SQNRKVRLFKG--GLLKTSYTNGQHWLPV--------SQNENGECGAKSECYIVPDIRNRFSPTI 302
            |...::|....  ||:..:.....|..|.        |..|.....|...|::..|.|......:
  Rat   313 SMANRLRNLSSPLGLMAVNEEVSDHGRPFPPFVKMKPSPCEVINATAGVPCFLAGDSRASEQILL 377

  Fly   303 ALLQTLLVREHNRLAENLALINPDHSDERIFQEARKINIAQFQKITYYDWLPLFVGRTYTYLNGL 367
            |...||.:|||||||..|:.:||....|.::||.|||..|..|.||:.|:||:.:|   ..:...
  Rat   378 ATSHTLFIREHNRLARELSTLNPHWDGETLYQETRKIMGAFIQIITFRDYLPILLG---DEMQKW 439

  Fly   368 IYPVEPTEYVNDYDETVNPAAYAEFSAAAFRYAHTQIPGWFSLVAPNRR---SNRTMRLSDFLDR 429
            |.|.:      .|:|:|:|.....|: .|||:.|.:||...|.:..|.:   |...:.|....  
  Rat   440 IPPYQ------GYNESVDPRISNVFT-FAFRFGHLEIPSTVSRLDENYQPWGSEPELPLHTVF-- 495

  Fly   430 TETIRLLDTSDNFDALLRGL----ATQLHKRSDGNIDREIKHYFNRKEFEE----YGSDLKSIDI 486
            ..|.||: .....|.|:|||    |..:|:      ||.:......|.|:.    :|.||.||:|
  Rat   496 FNTWRLV-KDGGIDPLVRGLLAKKAKLMHQ------DRMMTGELRNKLFQPTHTIHGFDLASINI 553

  Fly   487 QRARDFGLASYNDVREFCGLRRAVDWADFAHEIPGEKIS-LLRRLYATPDDVELGVGGTLEYHVP 550
            ||.||.|:..||..|.||||.:.....:.:..:..|.:: .|..||.||.::::.:|...|..||
  Rat   554 QRCRDHGMPGYNSWRAFCGLSQPKTLEELSAVMENEVLAKKLLDLYGTPSNIDIWLGAIAEPLVP 618

  Fly   551 DALFGPTLLCVIGKQFLNTRRGDRFFFERENEGGFSRAQLAEIRKVSLSSLFCSNANYLHLIQPN 615
            ....||.|.|::|.||...|.||||::  ||.|.|:..|...::|:|.|.|.|.|.. :..:..|
  Rat   619 GGRVGPLLTCLLGHQFQRVRDGDRFWW--ENPGVFTEKQRESLQKLSFSRLVCDNTG-ITKVPLN 680

  Fly   616 VFVFPNSHNLLLNCNFIPQIDLSKW 640
            .|:.....:..::|:.:.::|||.|
  Rat   681 PFLANTYPHGFVDCSSVDKLDLSPW 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4009NP_001262655.1 An_peroxidase_like 77..>367 CDD:265428 94/323 (29%)
An_peroxidase 95..610 CDD:281139 174/565 (31%)
peroxinectin_like 228..605 CDD:188655 127/398 (32%)
LpoXP_006247147.1 An_peroxidase 136..675 CDD:281139 174/565 (31%)
myeloperoxidase_like 281..692 CDD:188656 132/432 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343970
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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