DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Irc and pxdn

DIOPT Version :9

Sequence 1:NP_001262653.1 Gene:Irc / 42049 FlyBaseID:FBgn0038465 Length:697 Species:Drosophila melanogaster
Sequence 2:NP_001076815.1 Gene:pxdn / 493201 XenbaseID:XB-GENE-923300 Length:1460 Species:Xenopus tropicalis


Alignment Length:775 Identity:192/775 - (24%)
Similarity:323/775 - (41%) Gaps:199/775 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LTTID--ANSSR------------DVNAELNRIPASKWLQYVETALDSVNRQKRLEDNLLGSDIT 69
            :.|:|  .||:|            |:.| |.|.|...:......|.:...|..:|..:.:.|.:.
 Frog   625 IATVDRAINSTRTHLFDSRPRSPGDLLA-LFRYPRDPYTVEQARAAEIFERTLQLIQDHVQSGLM 688

  Fly    70 VK-NGSLSH------AQLLDTLPSLASKKDNKLALKILKSSLLVFNSECLPNNIDGDKCRSYLEQ 127
            |. ||:..|      .|.|:.:.:|:....::   :|...|.:.|:.:...:  || .|.:.  |
 Frog   689 VDLNGTSYHYNDLVSPQYLNMIANLSGCATHR---RINNCSNMCFHQKYRTH--DG-TCNNL--Q 745

  Fly   128 KPLPEGSSLRTECENSLKGNREGHYAFRRLLGSSHYRNGF----------YQMFPNSGRRETVPA 182
            .|: .|:||.               ||.||| .|.|.|||          |..||       :|.
 Frog   746 HPM-WGASLT---------------AFERLL-KSVYENGFNLPRGISGRIYNGFP-------LPL 786

  Fly   183 AWSISKELYEPDHIQISKQQTFESNSNLALPQWAQFVEHDLSKPV---SQS-MSNGAPIEC---C 240
            ...:|..|.....|...:|.|.      .|.||.||::|||...|   ||: .|:|.  :|   |
 Frog   787 PRLVSTTLIGTHTITPDEQFTH------MLMQWGQFLDHDLDSTVVALSQARFSDGQ--DCSVVC 843

  Fly   241 SRDQINLQPRHHHPACAPILYQPGGK--YDVPSCLNYVRSALAVADCNFG----------GAEQL 293
            :.|          ..|.||:..|...  .:...|::.|||:..   |..|          ..||:
 Frog   844 TND----------APCFPIMVPPNDPRVRNNARCMSMVRSSPV---CGSGMTSLLMNSVYPREQM 895

  Fly   294 NQATGSLDLSQLYGFTAAAERKLR-------VLEGGLLRSTPRGEFDNALLPIATDTEGPSFCAR 351
            ||.|..:|.|.:||.:.....::|       :|:.|:::.:.:     .|||.||..  |:.|.|
 Frog   896 NQLTSYIDASNVYGSSDHESNEIRDSASHRGLLKQGIVQRSGK-----PLLPFATGP--PTECMR 953

  Fly   352 ----ATIGDGTCFAAGDSRVNSSPFSILIYTIFMRNHNKVAAELKQRNPRWSDEKLFQAAKAVNV 412
                :.|   .||.|||.|.|.......::|::.|.||::|.||.:.||.|..:.::...:.:..
 Frog   954 DENESPI---PCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLRLNPHWDGDTIYHETRKIVG 1015

  Fly   413 DIYRRVVIEEWLPEV---LGQKMSSEIRRKQPNRALEVSNEFAVAAIRFYFSMLPNELLNLTKDN 474
            ...:.:....|||::   :|.||..|.:...||....:.||||.||.||..:::         :.
 Frog  1016 AQMQHITYSHWLPKIFGDVGMKMLGEYKSYDPNVNAGILNEFATAAFRFGHTLI---------NP 1071

  Fly   475 VVYGTEKNNQYVFISKELPTKNLFELKEEIYKP---------------------KLQYTSQKLN- 517
            ::|..::.      .:.:|..:: .|....:.|                     |::.|||.|| 
 Frog  1072 ILYRLDEK------FEPIPQGHV-PLHRAFFSPFRIVNEGGIDPLLRGLIGVAAKMRVTSQLLNT 1129

  Fly   518 NILESLLNQETMKMDAAYSGGVVWHKDTKPTHA---DILAFDIQRGRDHGLLPYYRYLESCVLSR 579
            .:.|.|.:.                     .||   |:.|.::|||||||:.||:.:...|.|| 
 Frog  1130 ELTEKLFSM---------------------AHAVALDLAALNVQRGRDHGIPPYHDFRVFCNLS- 1172

  Fly   580 PVESWKDFEHFIPS-DVLDKLKTIYASWADVDLIVGGISENPVHGS-IGPTFSCIISEQFVHVLK 642
            .|:::.|..:.|.: ||.:|||.:|.|..::||....:.|:.:.|| :|||..|:::.||.::..
 Frog  1173 TVQTFDDLRNEIKNPDVREKLKRLYGSPLNIDLFPALMVEDLIPGSRLGPTLMCLLTTQFRNIRD 1237

  Fly   643 QN----QQKAVQKHTELVEQYRHFNGTKLLCLN-SGLSAVPQNIFQLPSARNQMVSCEDV 697
            .:    :...|....:|. |.:..:..::||.| ..::.|..::|::....:..|||:::
 Frog  1238 GDRFWYENPGVFTAAQLT-QIKQTSLARVLCDNGDNITKVQHDLFRVAEFPHGYVSCKNI 1296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IrcNP_001262653.1 An_peroxidase 151..672 CDD:281139 155/595 (26%)
An_peroxidase_like 290..637 CDD:265428 102/387 (26%)
pxdnNP_001076815.1 leucine-rich repeat 38..56 CDD:275380
LRR <54..235 CDD:227223
leucine-rich repeat 57..80 CDD:275380
LRR_8 104..163 CDD:338972
leucine-rich repeat 105..128 CDD:275378
leucine-rich repeat 129..152 CDD:275378
leucine-rich repeat 153..176 CDD:275378
leucine-rich repeat 177..189 CDD:275378
I-set 239..326 CDD:369462
I-set 335..422 CDD:369462
Ig3_Peroxidasin 439..512 CDD:143222
Ig4_Peroxidasin 535..603 CDD:143223
peroxidasin_like 856..1295 CDD:188658 122/490 (25%)
VWC 1402..1452 CDD:214564
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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