DRSC/TRiP Functional Genomics Resources

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Protein Alignment Irc and skpo-1

DIOPT Version :9

Sequence 1:NP_001262653.1 Gene:Irc / 42049 FlyBaseID:FBgn0038465 Length:697 Species:Drosophila melanogaster
Sequence 2:NP_495768.1 Gene:skpo-1 / 174340 WormBaseID:WBGene00009897 Length:655 Species:Caenorhabditis elegans


Alignment Length:656 Identity:171/656 - (26%)
Similarity:261/656 - (39%) Gaps:159/656 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 QLLDTLPSLASKKDNKLALKILKSSLLVFNSECLPNNIDGDKCRSYLEQKPLPEGS--------- 134
            |.|.:.||...:..|.: :.:...:..:|:|..|........|   .|::..|:.|         
 Worm    83 QFLPSRPSSIPEGCNSV-MTVEAETRRIFSSGQLTARFRQQMC---AEEQVAPDCSINQCFHKKY 143

  Fly   135 -SLRTEC---ENSLKGNREGHYAFRRLLGSSHYRNGFYQMFPNSGRRETVP---AAWSISKELYE 192
             |:...|   :|.:||  ....||.||:.:: |.:||..:...|.|....|   :.:.:|.|...
 Worm   144 RSMDGTCNNLQNPVKG--AAFTAFTRLMPAA-YDDGFNTLVSASRRNRPNPREVSVFLLSSERSL 205

  Fly   193 PDHIQISKQQTFESNSNLALPQWAQFVEHDLSKPVSQSMSNGAPIEC-CSRDQINLQPRHHHPAC 256
            |.|:          ||.|.|  :.|||.||::       ||.|...| |         ::..|.|
 Worm   206 PGHV----------NSLLML--FGQFVSHDIT-------SNAAQNFCGC---------QNSGPMC 242

  Fly   257 APILYQPGGKYDVPSCLNYVRSALAVADCNFGGA-EQLNQATGSLDLSQLYGFTAAAERKLRVLE 320
            |.|...|..:  ...|:.:.||........||.. ||||..|.::|.|.:||..|...|.||.  
 Worm   243 ASIFAPPSDR--SRRCIPFTRSFPICGTGQFGRVREQLNMNTAAIDASLIYGSEAITARSLRF-- 303

  Fly   321 GGLLRSTPRGEFDNALLPIATDTEGPSFCARATIGDGTCFAAGDSRVNSSPFSILIYTIFMRNHN 385
            ..:||::..|              |..|......|..|   |||.|.........::|.|:|.||
 Worm   304 AAMLRTSMIG--------------GRMFPPNTNPGSLT---AGDGRAILFVGLAALHTSFLRLHN 351

  Fly   386 KVAAELKQRNPRWSDEKLFQAAKAVNVDIYRRVVIEEWLPEVLGQKMSSEI---RRKQPNRALEV 447
            .|||.|:..|..|:.:::||.::.:...|.:.:..:|::||::|....:.:   ....||..:.|
 Worm   352 NVAARLQNMNRHWNADRIFQESRKIVGGIVQVITYQEFVPELIGDASKTILGAYNGYNPNVEIGV 416

  Fly   448 SNEFAVAAIRFYFSMLPNELLNLTKDNVVYGTEKNNQYVFISKELPTKNLFELKEEIYKPKLQYT 512
            .||||..|.|.:      .::..|...|....::.|:|.||                        
 Worm   417 LNEFAAGAYRLH------GMIQETYPLVNSQFQEVNRYRFI------------------------ 451

  Fly   513 SQKLNNILESLLNQETMKMDAAYSGGVVWHKDTKPTHA-----------------DILAFDIQRG 560
             ..:|||...|.|     :||.|.|.:     |.|..:                 |:.|.:||||
 Worm   452 -DGVNNINHVLNN-----IDAIYRGMM-----TVPVRSPQRLTTSVTERLFGGSVDMAAVNIQRG 505

  Fly   561 RDHGLLPYYRYLESCVLSRPVESWKDFEHFIPSDVLDKLKTIYASWADVDLIVGGISENPVHGS- 624
            |||||..|..|...|.| ||:.|:.|:......:|..::..:|.:..|:|..||||.|.|..|| 
 Worm   506 RDHGLRSYNDYRRFCNL-RPITSFNDWPEVPDENVRQRIGQLYRTPDDLDFYVGGILEQPAAGSL 569

  Fly   625 IGPTFSCIISEQFVHVLKQNQQKAVQKHTELVEQYRHFNGTKLLCLNSGLSAVPQNIFQLPSARN 689
            :|.||:|:|.:||                   |:.|  :|.:....|.|:...|| :.:|.....
 Worm   570 LGATFACVIGKQF-------------------ERLR--DGDRFYYENPGVFTSPQ-LAELKRTTL 612

  Fly   690 QMVSCE 695
            ..|.|:
 Worm   613 SWVLCQ 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IrcNP_001262653.1 An_peroxidase 151..672 CDD:281139 147/546 (27%)
An_peroxidase_like 290..637 CDD:265428 104/368 (28%)
skpo-1NP_495768.1 ShKT 22..56 CDD:214586
An_peroxidase 143..623 CDD:281139 159/592 (27%)
peroxinectin_like 275..619 CDD:188655 116/427 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.78878 Normalized mean entropy S3904
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.770

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