DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and PRP21

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_012332.1 Gene:PRP21 / 853227 SGDID:S000003739 Length:280 Species:Saccharomyces cerevisiae


Alignment Length:315 Identity:68/315 - (21%)
Similarity:134/315 - (42%) Gaps:87/315 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNE-----FREGNDA 93
            :::..:..|.:::.::|.|||.::.::|    :|:|:...||.|.||...:||     ..|.|| 
Yeast     7 QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNEPTDTVSGEDND- 66

  Fly    94 GITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQF 158
                             ::.::|:.:            ||:|.|......||..|::::||||::
Yeast    67 -----------------RKSEREIAR------------PPDFLFSQYDTGISRRDMEVIKLTARY 102

  Fly   159 VARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLGKLRSESAPGRS 223
            .|:: :..:..::|:: ...:.:|:...|.|.:.||..:.||.:|.    ...|:...:|.  |:
Yeast   103 YAKD-KSIVEQMISKD-GEARLNFMNSSHPLHKTFTDFVAQYKRVY----SFTGQEIKKSK--RT 159

  Fly   224 SMNQVLEQVKYRANWQRHQEAQRRREEEK-IERERVAYAQIDWHDFVVVETV----DYQPFESG- 282
            .::...|:.:|   |:  .|..:.||.:| :|..::.:|.|.|..|..|...    |.:.||.. 
Yeast   160 ILDNCFERTQY---WE--FEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSL 219

  Fly   283 -----------------NFPPPTNPDEVGARVLMEERLMDEEGDTEMQIESDDEG 320
                             :...|||.         ||:::.::|   .|...|.:|
Yeast   220 DLEQMRLRRVQTGIKLFDSIKPTNE---------EEKIVSDQG---KQKGGDSKG 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 15/57 (26%)
Surp 150..200 CDD:280053 11/49 (22%)
PRP21_like_P 227..479 CDD:289034 25/117 (21%)
SF3a120_C 709..784 CDD:176395
UBQ 713..777 CDD:214563
PRP21NP_012332.1 SWAP 9..55 CDD:197818 13/49 (27%)
SWAP 93..144 CDD:197818 13/52 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345372
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003484
OrthoInspector 1 1.000 - - oto99849
orthoMCL 1 0.900 - - OOG6_102246
Panther 1 1.100 - - LDO PTHR15316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1278
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.770

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