DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and AT5G12280

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_568261.1 Gene:AT5G12280 / 831103 AraportID:AT5G12280 Length:419 Species:Arabidopsis thaliana


Alignment Length:770 Identity:128/770 - (16%)
Similarity:183/770 - (23%) Gaps:436/770 - (56%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGD 74
            |:...|:.|..          ||.|:|..:||.|..|||.|...|.:|.                
plant    78 EKDNSNEAPAE----------PPREMRIHMDKIARVVARKGLRIERKIM---------------- 116

  Fly    75 PYHAYYRHKVNEFREGN-DAGITALASMKQLAVTSAAQQRQQELLK---QVVEQQFVPKEPPPEF 135
                    .|:|:...| |.|              |.:......||   |...:.|:..:|.|:|
plant   117 --------NVSEYLAKNQDEG--------------AQEPEAPATLKGDAQHYRRPFLLSDPAPKF 159

  Fly   136 EFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQY 200
            .....|...:..|:|.:.||||.|.|.|.:|..:|:.......||:||:|..|.|.||.:|....
plant   160 PDYVLPEGYTIEDVDTIFLTAQIVGRYGEEFWLDLIKEVDNKPQFEFLKPADSKFDYFNRLSVVA 224

  Fly   201 TKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERERVAYAQIDW 265
            ::         |..|||.... |.|..|.:...|..          ||:.||.|.          
plant   225 SE---------GLKRSEKLTS-SRMAIVSKAFFYHL----------RRQNEKREL---------- 259

  Fly   266 HDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERLMDEEGDTEMQIESDDEGDSQANNLLDS 330
                                                              :..||.::|..|..:
plant   260 --------------------------------------------------THKEGAAKACTLFGA 274

  Fly   331 GLKLSQMENRVGIQMKNVSSYGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPSVAPMLPPTHDK 395
                                                              |...|.|        
plant   275 --------------------------------------------------LYAFVGP-------- 281

  Fly   396 VVVKKYDPKATQPKQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQ 460
                                                                             
plant   282 ----------------------------------------------------------------- 281

  Fly   461 DNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGHTSSVEAATRAA 525
            |..||                 ||                    ||:.:....|.|:::      
plant   282 DGCFA-----------------DI--------------------KDEDLPLLQHPSAIK------ 303

  Fly   526 RANITLEEQIHQIHKVKGLLPDEEKEKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQHHQGGGG 590
              ||                                                             
plant   304 --NI------------------------------------------------------------- 305

  Fly   591 GHHGHHNPHHHHPPHQQAPPHQSHHHHPPQQPQPVMQLMQLRPTMMQPPFGAGGGGYMNMQPGGI 655
                                                 |.:|:|.|  ||.|.             
plant   306 -------------------------------------LTKLQPRM--PPLGG------------- 318

  Fly   656 PQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQVLVPNSDKSEWKLNGQMIAV 720
                         |.|.|.   ..|..|:||..|:|.|....||.|.||:.|  :||    ::.:
plant   319 -------------ESEEPE---FDESVLVPEDQFLAQHPGSSTIMVSVPDPD--DWK----VVKI 361

  Fly   721 TM-ALSEPIANLKTKLQDETGMPPAKQKIFYEGMFFKDSNTMAFYNLVNGTTVHL 774
            |: :|||.:|:||.|:..|...|..|||:..:..|.||:.::|.||:..|..:.|
plant   362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKAGFLKDNTSLAHYNVGAGEILTL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 12/52 (23%)
Surp 150..200 CDD:280053 20/49 (41%)
PRP21_like_P 227..479 CDD:289034 17/251 (7%)
SF3a120_C 709..784 CDD:176395 23/67 (34%)
UBQ 713..777 CDD:214563 21/63 (33%)
AT5G12280NP_568261.1 Surp 174..220 CDD:366820 19/45 (42%)
Ubl_SF3a120 345..417 CDD:340498 29/78 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15316
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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