DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and AT5G06520

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_196270.1 Gene:AT5G06520 / 830540 AraportID:AT5G06520 Length:679 Species:Arabidopsis thaliana


Alignment Length:347 Identity:94/347 - (27%)
Similarity:142/347 - (40%) Gaps:88/347 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NEEQFGNDQPKSMSGPI-IGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNG 72
            |:.|.|  |..|...|. :..|.||||:|:.|:.||..|::||.|.|.::.:..:.:.:..|:..
plant   376 NDLQSG--QSNSNKAPASVAPIEPPPEIRSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWS 438

  Fly    73 GDPYHAYYRHKVNEFREGNDAGITALASMKQLAVTSAAQQRQQELLKQVVEQ-----QFVPKEPP 132
            .|||||:|:.|:.|:|..|                   |.|..::...|:..     :|..||  
plant   439 TDPYHAFYQLKLAEYRAQN-------------------QDRAHDIQPNVLRSFGFGFEFPEKE-- 482

  Fly   133 PEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLR-PQHSLFQYFTKL 196
                       |:..:|.|:||||||:||.|..|:..|..|...|.||.||. ..:|.|.::..|
plant   483 -----------ITLKELGIIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGL 536

  Fly   197 LEQYTKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERERVAYA 261
            :..|::||:|.| :|.|....:|.........|               |..:.||.::.:     
plant   537 VIAYSRVLMPSK-MLSKSDDCTATVVDGFLSCL---------------QLEKREEGVDID----- 580

  Fly   262 QIDWHD-FVVVETVDYQPFESGNFP----------PPTNPD----------EVGARVLMEERLMD 305
            .||..| |..:|..||    |.|.|          ||..|:          ...:.||.::....
plant   581 MIDLLDCFARLEDADY----SANVPQPQHLSTQMQPPHTPETSPPLPLPLKNESSPVLADQHPDS 641

  Fly   306 EEGDTEMQIESDDEGDSQANNL 327
            ...|.|.|: .|..|.|..:|:
plant   642 STIDDEWQV-IDFTGQSLPDNV 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 18/52 (35%)
Surp 150..200 CDD:280053 21/50 (42%)
PRP21_like_P 227..479 CDD:289034 26/122 (21%)
SF3a120_C 709..784 CDD:176395
UBQ 713..777 CDD:214563
AT5G06520NP_196270.1 SWAP 90..142 CDD:197818
SWAP 219..272 CDD:197818
SWAP 402..454 CDD:197818 18/51 (35%)
Surp 489..540 CDD:280053 21/50 (42%)
UBQ 647..>679 CDD:294102 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15316
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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