DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sf3a1 and AT3G49130

DIOPT Version :10

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_190482.1 Gene:AT3G49130 / 824074 AraportID:AT3G49130 Length:307 Species:Arabidopsis thaliana


Alignment Length:372 Identity:79/372 - (21%)
Similarity:125/372 - (33%) Gaps:105/372 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FNFLNGGDPYHAYYRHKVNEFREGNDAGITALASMKQLAV--TSAAQQRQQELLKQVV--EQQFV 127
            |:|:.||: |.|                  |:...::|:|  .:...|.|.:::.|:.  .|..:
plant     5 FDFVGGGN-YSA------------------AMPPPERLSVMIMNRVAQTQPDMVLQLPLGSQLTI 50

  Fly   128 PKEPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQY 192
            |.:            .|:..:|.::|||||...|.|..|...|..|...|..|.||.|..|...:
plant    51 PAK------------GITLKELGVMKLTAQSSVRYGFDFWCGLWKRVYMNPLFQFLNPSDSRSDF 103

  Fly   193 FTKLLEQYTKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERER 257
            :......|::||.|.|    ||:...|    ....|||...:|.:..:.:|.             
plant   104 YNGFTAAYSRVLKPSK----KLKKFDA----CTATVLEGFFHRLHLFKLEEG------------- 147

  Fly   258 VAYAQIDWHDFVVVETVD-YQPFESGNF----PPPTNPDEVGARVLMEERLMDEEGDTEMQIESD 317
            |..|.||.|.||.  .|| :......|:    .||..|.      :|..:|...:.:.....|..
plant   148 VETAMIDLHGFVY--GVDCFAHMADDNYSAIMDPPERPS------MMINQLTQIQRNAPAPHEKC 204

  Fly   318 DEGDSQANNLLDSGLKLSQMENRVGIQMKNVSSYGQPTG------------------PKRDNTQV 364
            .:...........|:.|.:::....:.||....:.:||.                  |..|....
plant   205 LKRSYNFPYAFGGGISLKELDLMKKVVMKPQFKFMEPTNSVFGLYNVVVDAYSRVVKPSDDAYAS 269

  Fly   365 QDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKKYDPKATQPKQA 411
            ..|.:.:..|: |..|.|                 |:|..|..|:.|
plant   270 MGMMQTARPEE-PEAKRQ-----------------KFDESALNPEGA 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 6/21 (29%)
Surp 150..200 CDD:460339 16/49 (33%)
PRP21_like_P 228..480 CDD:403444 39/207 (19%)
Ubl_SF3a120 696..777 CDD:340498
AT3G49130NP_190482.1 Surp 61..111 CDD:460339 16/49 (33%)
SWAP <223..258 CDD:197818 4/34 (12%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.