DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sf3a1 and Sf3a1

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_080451.4 Gene:Sf3a1 / 67465 MGIID:1914715 Length:791 Species:Mus musculus


Alignment Length:850 Identity:434/850 - (51%)
Similarity:547/850 - (64%) Gaps:139/850 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MATLDAEANEEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNP 65
            :||...:..||:..:.:..:.|.|::|||||||||||||||||||||||||||||||||||:.||
Mouse    15 VATESKQPIEEEASSKEDPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNP 79

  Fly    66 KFNFLNGGDPYHAYYRHKVNEFREGN----DAGITALASMKQLAVTSAAQQRQQELLKQVVEQQF 126
            ||||||..|||||||||||:||:||.    .|.|..:...:|.|   ..||..|::..||:::..
Mouse    80 KFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQA---TQQQLPQKVQAQVIQETI 141

  Fly   127 VPKEPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQ 191
            ||||||||||||||||||||.|||:|||||||||||||||||.||.:||||:||||||||||||.
Mouse   142 VPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFN 206

  Fly   192 YFTKLLEQYTKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERE 256
            |||||:|||||:|||||.|..||:.|:...|    :||:||.||..|.:.||.:|::|||:.|:|
Mouse   207 YFTKLVEQYTKILIPPKGLFSKLKKEAENPR----EVLDQVCYRVEWAKFQERERKKEEEEKEKE 267

  Fly   257 RVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERL--MDEEGDTEMQIESDDE 319
            |||||||||||||||||||:||.|.|||||||.|:|:|||:|::||.  ..|..:.||::|||:|
Mouse   268 RVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEE 332

  Fly   320 GDSQANNLLDSGLKLSQMENRVGIQMKNVSSYGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPS 384
            ...:|..      ..||::                     .:||||||||.|.||:.......|.
Mouse   333 DQEKAEE------TPSQLD---------------------QDTQVQDMDEGSDDEEEGQKVPPPP 370

  Fly   385 VAPM---LPPTHDKVVVKK-YDPKATQP-KQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDP 444
            ..||   ||||.|:|:|:| |||||::| ..||.| ||||:||||||||||||:.||||||||||
Mouse   371 ETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDP 434

  Fly   445 RWVEQRDKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKK-DDR 508
            ||:||||:...||.:.|.|:|.|..||:|||||||||||||||  |||.||||:||||.:| :::
Mouse   435 RWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEK 497

  Fly   509 VTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLP-DEEKEKIGP-KPVGNKATLSAPPQPS 571
            ||||||:.|:....:||:|||||:|||..|||.|||:| |:.|||||| ||  |:.. ..||.||
Mouse   498 VTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKP--NEIP-QQPPPPS 559

  Fly   572 TKSQHSHSSQSQHHQGGGGGHHGHHNPHHHHPPHQQAPPHQSHHHHPPQQPQPV-MQLMQLRPTM 635
            :.:....|:                      ||....|       .||..|.|| ..::...|.|
Mouse   560 SATNIPSSA----------------------PPITSVP-------RPPAMPPPVRTTVVSAVPVM 595

  Fly   636 MQPPFGAGGGGYMNMQPGG-----------------------------------IPQQIAPAPPV 665
            .:||..:    .:.:.||.                                   :|....|||||
Mouse   596 PRPPMAS----VVRLPPGSVIAPMPPIIHAPRINVVPMPPAAPPIMAPRPPPMIVPTAFVPAPPV 656

  Fly   666 ---------------DIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQVLVPN-SDKSEWKLN 714
                           ..||:||||||:::||:|:||.:|:..:|.||:|:|.||| .||:|||||
Mouse   657 APVPAPAPMPPVHPPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLN 721

  Fly   715 GQMIAVTMALSEPIANLKTKLQDETGMPPAKQKIFYEGMFFKDSNTMAFYNLVNGTTVHLQVKER 779
            ||.:..|:.|::.::.:|.|:.:.||||..|||:.|||:|.||||::|:||:.:|..:||.:|||
Mouse   722 GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKER 786

  Fly   780 GGRKK 784
            |||||
Mouse   787 GGRKK 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 47/52 (90%)
Surp 150..200 CDD:280053 42/49 (86%)
PRP21_like_P 227..479 CDD:289034 138/258 (53%)
SF3a120_C 709..784 CDD:176395 38/74 (51%)
UBQ 713..777 CDD:214563 29/63 (46%)
Sf3a1NP_080451.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41 6/25 (24%)
SWAP 50..103 CDD:197818 47/52 (90%)
SURP motif 1 52..94 37/41 (90%)
Surp 165..215 CDD:307771 42/49 (86%)
SURP motif 2 166..208 36/41 (88%)
PRP21_like_P 232..470 CDD:315004 126/244 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..411 29/95 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..516 24/29 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 528..582 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..684 9/69 (13%)
Required and sufficient for nuclear import. /evidence=ECO:0000250|UniProtKB:Q15459 678..700 13/36 (36%)
SF3a120_C 716..791 CDD:176395 37/75 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845974
Domainoid 1 1.000 255 1.000 Domainoid score I2038
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4294
Inparanoid 1 1.050 772 1.000 Inparanoid score I533
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55212
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 1 1.000 - - FOG0003484
OrthoInspector 1 1.000 - - oto94097
orthoMCL 1 0.900 - - OOG6_102246
Panther 1 1.100 - - LDO PTHR15316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1278
SonicParanoid 1 1.000 - - X3377
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

Return to query results.
Submit another query.