DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and cherp

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_012816162.1 Gene:cherp / 496512 XenbaseID:XB-GENE-996440 Length:955 Species:Xenopus tropicalis


Alignment Length:922 Identity:192/922 - (20%)
Similarity:290/922 - (31%) Gaps:353/922 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PP---EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDA 93
            ||   |:||::||.|.||||||||||....:.:..||||:||.||:.|: ||:.|:         
 Frog     6 PPEDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYN-YYKCKL--------- 60

  Fly    94 GITALASMKQLAVTSAAQQRQQ-------ELLKQVVEQQ---FVPKEPPPEFEF---IADPPSIS 145
                            |.::||       .|.||..:.:   .:|..|||....   :..||   
 Frog    61 ----------------AMEQQQYICFSHTVLCKQAQDMEPKAQIPTIPPPALPLPPTLVPPP--- 106

  Fly   146 ALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFD-----FLRPQ-------HSLFQYFTKLLE 198
                            .|...:.:|:.:.|.|||..     .||.:       |::.|...||.|
 Frog   107 ----------------QGAPPIDDLIQQSQWNFQQQEQQLLSLRQEQVTAAVAHAVEQQMQKLRE 155

  Fly   199 -------QYTKVLIP-----PKD---------------------LLGKLRSESAPGRSSMNQVLE 230
                   ::..:|.|     .||                     :.|.||:......:.....|.
 Frog   156 ETQLDMTEFDNLLQPIIDTCTKDAISGGKNWMFSNAKSPQHCELMAGHLRNRITAEGARFELRLH 220

  Fly   231 QVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGA 295
            .: |..|...| ..||::..:.:...:.....|....|:.||....|..               |
 Frog   221 LI-YLINDVLH-HCQRKQARDLLAALQKVVVPIYCTSFLAVEEDKQQKI---------------A 268

  Fly   296 RVLMEERLMDEEG----DTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGI----QMKNVSSYG 352
            |:|   :|.::.|    .|.:|::|...|..|....|.:  :.|.|...|.:    |::.:.:..
 Frog   269 RLL---QLWEKNGYFDEATILQLQSPALGLGQHQAALLT--EYSSMVQPVLVAFQQQLQTLKTQH 328

  Fly   353 QP--TGPKRDNTQVQ-----DMDEASSDEDTPTTKLQPSVAPMLPPTHD-KVVVKKYDPKATQPK 409
            :.  ||.|:...|:|     .:.|..:....||....|...|:.||..: |..:....|...:|.
 Frog   329 EEFVTGLKQQQQQIQIPVMEPIPETPAPAPAPTPVPVPMPVPVPPPPEEVKPAMTIPAPAEFEPP 393

  Fly   410 QAPMPTDEYLISPITG--------EKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQDNVFAA 466
            .||:|      .|..|        |:||.:|           |.|.:|..               
 Frog   394 PAPVP------DPAAGGGRGPPPHEQIPHNK-----------PPWFDQPQ--------------- 426

  Fly   467 GTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGH---------TSSVEAAT 522
                            .|...|.::..             ::..:..|         ::|.|...
 Frog   427 ----------------PIAPWGQQQPC-------------EQPPFPHHPAPPHCPPWSNSHEGMW 462

  Fly   523 RAARANITLEEQIHQIHKVKGLLPDEEKEKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQHHQ- 586
            ...|.                  |:...|   |:|..|...     :|...:|......:||.| 
 Frog   463 NEQRD------------------PNWNNE---PEPAWNNQR-----EPPWNNQFDAPWSNQHEQP 501

  Fly   587 --------------GGGGGHHGHHNPHH--HHPPHQQA--PPHQSHHHHPPQ--QPQPVMQLMQL 631
                          |||||..|..:||.  ..|||.:.  ||||   .||||  ||.......:.
 Frog   502 PWGGGGGGGGGGGGGGGGGGGGQRDPHFRMQRPPHFRGPFPPHQ---QHPPQFNQPPHPHNFNRF 563

  Fly   632 RPTMMQ-----------PP-----------FGAGGG----------GYMNMQ---PGGIPQQIAP 661
            .|..||           ||           |.|..|          .:.||.   |.|.||....
 Frog   564 PPHFMQEEFPPRHPFERPPFPHRFDFPQGDFPADMGPPHHHQGHRMPHPNMNEHPPWGGPQHPDF 628

  Fly   662 APPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQVLVPNSDKSEWKLNGQMIAVTMALSE 726
            .||......:||..:.:...::        .|..|    .||||....:         :...|..
 Frog   629 GPPPHGFNGQPPHMRRQGPPHI--------NHDDP----SLVPNVPYFD---------LPAGLMA 672

  Fly   727 PIANLKTKLQDE-------------TGMPPAKQKIFYEGMFF------KDSNTMAFYNLVNGTTV 772
            |:    .||:|.             ..|||:::.:.....|:      :..|:..:..  ||...
 Frog   673 PL----VKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQ--NGLYE 731

  Fly   773 HLQVKERGGRKK 784
            ..:.|.|..|:|
 Frog   732 FFRAKMRARRRK 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 27/52 (52%)
Surp 150..200 CDD:280053 13/68 (19%)
PRP21_like_P 227..479 CDD:289034 53/275 (19%)
SF3a120_C 709..784 CDD:176395 15/93 (16%)
UBQ 713..777 CDD:214563 12/82 (15%)
cherpXP_012816162.1 SWAP 13..65 CDD:197818 28/77 (36%)
CTD_bind 218..280 CDD:368137 16/81 (20%)
PAT1 <530..>655 CDD:370676 32/135 (24%)
G-patch 856..901 CDD:366717
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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