Protein Alignment Sf3a1 and scaf6

DIOPT Version :10

• Sequence 1: NP_650583.1
• Gene: Sf3a1 / 42048
• FlyBaseID: FBgn0266917
• Length: 784
• Species: Drosophila melanogaster
• Sequence 2: NP_001014589.1
• Gene: scaf6 / 3346235
• FlyBaseID: FBgn0261872
• Length: 960
• Species: Drosophila melanogaster
• Alignment Length: 843
• Identity: 170/843 - (20%)
• Similarity: 262/843 - (31%)
• Gaps: 341/843 - (40%)

  Fly    29 IYPPPE--VRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGN 91
            :.||.:  :|||:||.|.|||||||||||..:|.:..||||.||.||: :..||:.:|
  Fly     3 VQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE-FANYYQFRV------- 59

  Fly    92 DAGITALASMKQLAVTSAAQQRQQELLK-QVVEQQFVP--------KEPPPEFEFIADPPSISAL 147
                             ||   :|.||| |.:.||..|        :.|||..:  :.||.
  Fly    60 -----------------AA---EQALLKQQAINQQLPPGAPSGHYMQHPPPMQQ--SQPPG---- 98

  Fly   148 DLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLG 212
                                                                    |.||.:
  Fly    99 --------------------------------------------------------LYPPPN--- 104

  Fly   213 KLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQ 277
              :....|..::.:.:.:|.::  :|
  Fly   105 --QQPPHPPETAQDNMQQQTQH--SW--------------------------------------- 126

  Fly   278 PFESGNFPPPTNPDEVGARVLMEERLMDEEGDTEMQIESDDEGDSQANNLLD--SGLKLSQMENR 340
            |..|||..||.|                          ....|:..|.||..  ..:|:.|...|
  Fly   127 PPNSGNGGPPNN--------------------------QQANGNPMAMNLTSQLEAIKMQQKSLR 165

  Fly   341 VGIQMKNVSSYGQPTGPKRDNT-QVQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKKYDPK 404
            ..||....:...|.|......| |::|...|:.      |..|..:|     ....:|::.:| .
  Fly   166 EQIQQSEANLSAQHTALMNQKTKQIEDAIAAAQ------TAQQEQMA-----GEQGIVLRDFD-G 218

  Fly   405 ATQPKQAPMPTDEYLISPITGEKIPASK--VSEH--------------MRIGLLDPRWVEQRDKH 453
            ..||          :|...|.:.|.|.|  :.:|              ::..|::....:|: .|
  Fly   219 VLQP----------IIESCTKDSISAGKNWILQHSTDSAKINVVLQYLLKKALVNGSTFQQK-LH 272

  Fly   454 TVEKINQ-----------------DNV----FAAGTAIE--------ASLKQLAERRTDIFGVGD 489
            .:..:|.                 :||    |.:...|.        |.|..|.|.:...|
  Fly   273 LIYLVNDILHHCMRKNINDLKNSLENVVIPMFCSADLIGNPDQRQKLAKLLSLWESKAKFF---- 333

  Fly   490 EETVIGK----KLGEEETKKDDRVTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEK 550
            :..||.|    ....:|.|.:.:.|....|:.....|:|...|...:..:...|..:.::..|::
  Fly   334 DACVISKLQSPDSSMQEYKTNLQNTHHDITAKFTQNTKATLDNYQKQHHVFIQHASQQIVQLEKQ 398

  Fly   551 EKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQH--------HQGGGGGHHGHHNPHHHHPPHQQ 607
            .:...:.:           .:.|||..|..|.|.        |:....|.|.|.|   ...||.|
  Fly   399 AQHLEQQI-----------VAQKSQQQHMLQHQQKNIPSLMSHRIAMPGDHEHMN---SQGPHDQ 449

  Fly   608 APPHQSHHHHP-----PQQPQPVMQLMQLR------PTMMQPPFGAGGG---------GYMNMQP 652
            ..|...::.:|     .|||.|.......|      |.|.:||.|..|.         |....||
  Fly   450 QHPQAGNNMYPGGNFQQQQPPPGNHFADPRGPNFFIPDMSKPPPGFPGPMHHNQGPAMGQQQPQP 514

  Fly   653 GGIPQQIAPA----PPVDI------------ME-----EEPPSK---KIRSEDNLIPEADFIATH 693
            |..|...||.    ||||:            |:     ::|..:   :::.:....|:     ..
  Fly   515 GQFPPMQAPGSGNEPPVDLGVLSAAIQACLQMQQQHHPDDPQQQGQHQLQQQQQQQPQ-----QQ 574

  Fly   694 KSPVTI-----QVLVP---NSDKSEWKLNGQMIAVTMALSEPIANLKTKLQD---ETGMPPAK 745
            |.|..:     .::.|   |:|.||..|:    .:..|:...|.|   |.:|   |.|..|.|
  Fly   575 KQPPPMAAYPQNIVRPGQQNADSSEVDLD----VLNAAIRAVITN---KPEDGTLEDGQQPQK 630

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sf3a1	NP_650583.1	SWAP	36..89	CDD:197818	29/52 (56%)
		Surp	150..200	CDD:460339	0/49 (0%)
		PRP21_like_P	228..480	CDD:403444	48/299 (16%)
		Ubl_SF3a120	696..777	CDD:340498	16/61 (26%)
scaf6	NP_001014589.1	SWAP	12..63	CDD:197818	31/78 (40%)
		CID	219..338	CDD:461442	21/133 (16%)
		G-patch	885..933	CDD:396249