DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and scaf6

DIOPT Version :10

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_061501341.1 Gene:scaf6 / 3290075 VectorBaseID:AGAMI1_001406 Length:1060 Species:Anopheles gambiae


Alignment Length:688 Identity:155/688 - (22%)
Similarity:236/688 - (34%) Gaps:238/688 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PP---EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDA 93
            ||   |:|||:||.|.||||||||||:..:..:.|||||.||.||:.|: ||::||         
Mosquito     8 PPNDIELRNIIDKLADFVARNGPEFESMTKSKQRGNPKFAFLYGGEFYN-YYQYKV--------- 62

  Fly    94 GITALASMKQLAVTSAAQQRQQEL-LKQVVEQQFVP-------KEPPPEFEFIADPPSISALDLD 150
             ||..|.|||     ..||.||.: |..::.|..:|       ::|||:.:.   ||:::     
Mosquito    63 -ITKQAMMKQ-----QQQQPQQNMSLPSLLGQHGIPPLLAGFGQQPPPQAQL---PPNVA----- 113

  Fly   151 IVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLGKLR 215
                                |.:.|:..|......|.|..|...:|         ||        
Mosquito   114 --------------------MQQHQQQQQQQLHHQQQSQAQLSGQL---------PP-------- 141

  Fly   216 SESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQPFE 280
            :.|.|..:..:..:.|:                                |.:             
Mosquito   142 ASSNPNGNGSSNTMHQI--------------------------------WSN------------- 161

  Fly   281 SGNFPPPTN--PDEVGARVLMEERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRV-- 341
                |||.|  |...|.:::        ......|:.:..|..::....|...::.|:|..:.  
Mosquito   162 ----PPPVNAGPPNNGGQMV--------ANSMNAQLAAQLEALTKQQQTLTEQIRQSEMNLKAQH 214

  Fly   342 GIQMKNVSSYGQPTGPKRDNTQVQDMDEA--SSDEDTPTTKLQPSVAPMLPPTHDKVVVKKYDPK 404
            |:.::              ..||| :|||  .:.|:....:.|....|:    |:      :|.|
Mosquito   215 GVLLQ--------------QQQVQ-IDEALNRAQEEMLIAQSQEYNLPL----HE------FDSK 254

  Fly   405 ATQPKQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQR--DKHTVEKINQ---DNVF 464
             .||          :|...|.:.|...|            .|:.|.  |....:.|:|   ....
Mosquito   255 -LQP----------IIDSCTKDSISNGK------------GWILQHCTDSGKCQIISQYLLRKAL 296

  Fly   465 AAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGHTSSVEAAT--RAARA 527
            .||......| .|.....|:....::...|.|  ..:|.||           .:|:|.  ....|
Mosquito   297 IAGVLFTQKL-HLIYLVNDVIHHCNKSCSIRK--NADELKK-----------CLESAVIPMFCNA 347

  Fly   528 NITL-EEQIHQIHKVKGLLPDEEKEKIGPKPVGNKATLSAPP------QPSTKSQHSH--SSQSQ 583
            .||. :||..::.|:..|.  |.|.......|.:|  |.:||      |.|..:||::  ::.:|
Mosquito   348 QITANDEQRVKLTKLLSLW--ESKGNFFDACVISK--LKSPPSSLQEYQTSLVTQHANVVAAITQ 408

  Fly   584 HHQGGGGGHHGHHNPHHHHPPHQ------QAPPHQSHH-----HHPP--QQPQPVMQLMQLRPTM 635
            ..:.....:...|.....|...|      |...|...|     .|.|  ..|.|::      |.:
Mosquito   409 ATKNTFENYQQQHQAFVQHATQQITLLEKQKQQHLEQHARKTGAHVPLGGAPPPLL------PEL 467

  Fly   636 MQPPFGAGGGGYMNMQPGGIPQQIAPAPPVDIMEEEPP 673
            |....|..|||.:|..|||  ..:.||.|...:...||
Mosquito   468 MAAVVGVTGGGPVNGGPGG--GLVGPALPPSALPPGPP 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 30/52 (58%)
Surp 150..200 CDD:460339 7/49 (14%)
PRP21_like_P 228..480 CDD:403444 41/262 (16%)
Ubl_SF3a120 696..777 CDD:340498
scaf6XP_061501341.1 None
Blue background indicates that the domain is not in the aligned region.

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