Sequence 1: | NP_650583.1 | Gene: | Sf3a1 / 42048 | FlyBaseID: | FBgn0266917 | Length: | 784 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006252858.1 | Gene: | Cherp / 290614 | RGDID: | 1305279 | Length: | 946 | Species: | Rattus norvegicus |
Alignment Length: | 917 | Identity: | 187/917 - (20%) |
---|---|---|---|
Similarity: | 280/917 - (30%) | Gaps: | 340/917 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 32 PP---EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDA 93
Fly 94 GITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQF 158
Fly 159 VARNGRQFLTNLMSREQRNFQFD-----FLRPQ-------HSLFQYFTKLLE-------QYTKVL 204
Fly 205 IP-----PKD---------------------LLGKLRSE-SAPG-----RSSMNQVLEQVKYRAN 237
Fly 238 WQRHQEAQRRREEEKIERERVAYAQ-----IDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARV 297
Fly 298 LMEERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGIQMKNVSSYGQPT------- 355
Fly 356 --GPKRDNTQ-----VQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKKYDPKATQPKQAPM 413
Fly 414 PTDEYLISPIT---------------------GEKIPASK----VSEHMRIGLLDPRWVEQRDKH 453
Fly 454 TVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVG----------DEETVIGKKLGEEETKKDDR 508
Fly 509 VTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEKEKIGPKPVGNKATLSAPPQPSTK 573
Fly 574 SQHSHSSQSQHHQGGGGGHHGH---------HN------------------------PH------ 599
Fly 600 ----------HHHPPHQQAPPHQSHHHHPP-QQPQPVMQLMQLRPTMMQPPFGAGGGGYMNMQPG 653
Fly 654 GIPQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQVLVPNSDKSEWKLNGQMI 718
Fly 719 AVTMALSEPIANLKTKLQDETGMPPAKQKIFYEGMFF------KDSNTMAFYNLVNGTTVHLQVK 777
Fly 778 ERGGRKK 784 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sf3a1 | NP_650583.1 | SWAP | 36..89 | CDD:197818 | 26/52 (50%) |
Surp | 150..200 | CDD:280053 | 14/68 (21%) | ||
PRP21_like_P | 227..479 | CDD:289034 | 58/295 (20%) | ||
SF3a120_C | 709..784 | CDD:176395 | 14/80 (18%) | ||
UBQ | 713..777 | CDD:214563 | 9/69 (13%) | ||
Cherp | XP_006252858.1 | SWAP | 13..65 | CDD:197818 | 27/77 (35%) |
CTD_bind | 212..282 | CDD:282648 | 16/89 (18%) | ||
G_patch | 858..908 | CDD:197727 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1256232at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |