DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sf3a1 and Cherp

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_006252858.1 Gene:Cherp / 290614 RGDID:1305279 Length:946 Species:Rattus norvegicus


Alignment Length:917 Identity:187/917 - (20%)
Similarity:280/917 - (30%) Gaps:340/917 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PP---EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDA 93
            ||   |:||::||.|.||||||||||....:.:..||||:||.||: :::||:.|:         
  Rat     6 PPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGE-FYSYYKCKL--------- 60

  Fly    94 GITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQF 158
                            |.::||.:.|    ||....||......:..||         :..||..
  Rat    61 ----------------ALEQQQLICK----QQAPELEPTSAMPPLPQPP---------LAPTASL 96

  Fly   159 VARNGRQFLTNLMSREQRNFQFD-----FLRPQ-------HSLFQYFTKLLE-------QYTKVL 204
            ....|...:..|:.:.|.:.|..     .||.:       |::.|...||||       ::..:|
  Rat    97 TPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTTAVAHAVEQQMQKLLEETQLDMSEFDNLL 161

  Fly   205 IP-----PKD---------------------LLGKLRSE-SAPG-----RSSMNQVLEQVKYRAN 237
            .|     .||                     :.|.||:. :|.|     |..:..::..|.:  :
  Rat   162 QPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLH--H 224

  Fly   238 WQRHQEAQRRREEEKIERERVAYAQ-----IDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARV 297
            |...:.......:.|..||.:|..|     |....|:.||....|..               ||:
  Rat   225 WALTRGRSLPHSQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKI---------------ARL 274

  Fly   298 LMEERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGIQMKNVSSYGQPT------- 355
            |   :|.::.|..:         ||....|....|.|.|.:..:   :...||..||.       
  Rat   275 L---QLWEKNGYFD---------DSIIQQLQSPALGLGQYQATL---INEYSSVVQPVQLAFQQQ 324

  Fly   356 --GPKRDNTQ-----VQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKKYDPKATQPKQAPM 413
              ..|..:.:     .|...:....:..|....||.:  .|||....|.... .|.|..|..||.
  Rat   325 IQSLKTQHEEFVSSLAQQQQQQQQQQQPPQQPPQPQI--QLPPMEADVKATP-PPSAPPPASAPA 386

  Fly   414 PTDEYLISPIT---------------------GEKIPASK----VSEHMRIGLLDPRWVEQRDKH 453
            ||    |.|.|                     |.:.||:.    ...|.:|....|.|.:|  .|
  Rat   387 PT----IPPTTQPDDNKPPIQMPGSSEYDTSAGVQDPAAAGPRGPGPHEQIPPNKPPWFDQ--PH 445

  Fly   454 TVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVG----------DEETVIGKKLGEEETKKDDR 508
            .|....|              :|..|:.......|          ..|.:.|::.|:.       
  Rat   446 PVAPWGQ--------------QQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDP------- 489

  Fly   509 VTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEKEKIGPKPVGNKATLSAPPQPSTK 573
             .|:|...:..........|...|...:..|:              |.|.|     .|..:|..:
  Rat   490 -GWNGQRDAPWNNQPDPNWNNQFEGPWNNQHE--------------PPPWG-----GAQREPPFR 534

  Fly   574 SQHSHSSQSQHHQGGGGGHHGH---------HN------------------------PH------ 599
            .|     :..|.:|....|..|         ||                        ||      
  Rat   535 MQ-----RPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQ 594

  Fly   600 ----------HHHPPHQQAPPHQSHHHHPP-QQPQPVMQLMQLRPTMMQPPFGAGGGGYMNMQPG 653
                      ||||.|:.  ||...:.||| ..||        .|....||.|..|      || 
  Rat   595 GDFPADMGPPHHHPGHRM--PHPGINEHPPWAGPQ--------HPDFGPPPHGFNG------QP- 642

  Fly   654 GIPQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQVLVPNSDKSEWKLNGQMI 718
              |......|| .|..::|         :|:|...:.   ..|..:...:...:..|:|      
  Rat   643 --PHMRRQGPP-HINHDDP---------SLVPNVPYF---DLPAGLMAPLVKLEDHEYK------ 686

  Fly   719 AVTMALSEPIANLKTKLQDETGMPPAKQKIFYEGMFF------KDSNTMAFYNLVNGTTVHLQVK 777
                    |:.....:|...  |||:::.:.....|:      :..|:..:..  ||.....:.|
  Rat   687 --------PLDPKDIRLPPP--MPPSERLLAAVEAFYSPPSHDRPRNSEGWEQ--NGLYEFFRAK 739

  Fly   778 ERGGRKK 784
            .|..|:|
  Rat   740 MRARRRK 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 26/52 (50%)
Surp 150..200 CDD:280053 14/68 (21%)
PRP21_like_P 227..479 CDD:289034 58/295 (20%)
SF3a120_C 709..784 CDD:176395 14/80 (18%)
UBQ 713..777 CDD:214563 9/69 (13%)
CherpXP_006252858.1 SWAP 13..65 CDD:197818 27/77 (35%)
CTD_bind 212..282 CDD:282648 16/89 (18%)
G_patch 858..908 CDD:197727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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