DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and tag-65

DIOPT Version :9

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_506386.1 Gene:tag-65 / 179857 WormBaseID:WBGene00006442 Length:675 Species:Caenorhabditis elegans


Alignment Length:656 Identity:120/656 - (18%)
Similarity:219/656 - (33%) Gaps:229/656 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 VPKE-PPPEFEFI---ADPPSISALDLDIVKLTAQFV--------ARNG---------------- 163
            :|:: ||||.:.|   .|||.|......|.:|..:.:        .|||                
 Worm    26 LPRDFPPPERQSIPSLMDPPEIVEWRKKIDELRQKIIDSEQNLNAHRNGMDELLMAHLKSAIRTS 90

  Fly   164 ------RQFLTNLMSREQRNFQFDFL-RPQHS----------LFQYFTKLLEQYTKVLIPPKDLL 211
                  :....|.::.|..|...|.: .|:.|          :|:|.|.  :|..::::  ..||
 Worm    91 ETMKIEKMLSQNNLNVEDLNSYLDAMATPKCSKDLISQAKKWIFEYCTS--DQLREIIL--SFLL 151

  Fly   212 GKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIER------ERVAYAQIDWHDFVV 270
            .|::.| |.|......:|..:.   :|..|  .||::||.:::.      :..||.         
 Worm   152 NKVKDE-ASGEYLRLHILYLIN---DWAFH--CQRKKEENQMKMLARYVPKMYAYC--------- 201

  Fly   271 VETVDYQPFESGNFPPPTNPDEVGARVLMEERLMDE-EG-------------DTEMQIESDDEGD 321
            :|.              ::..|:..:  :|.:|:.| ||             :|...:.:|.|.:
 Worm   202 IEL--------------SSSSELSNK--LEGKLLGEWEGRQYFADSVFKQLRNTVQIVSTDREIE 250

  Fly   322 SQANNLLDSGLKLSQMENRVGIQMKNVSSYGQPTGPKRDNTQVQDMDE---------ASSDEDTP 377
            ..:...:...::.:.|....|.:.::| :|.|....:.|..: :.:||         ||...:.|
 Worm   251 KSSYGTIRESIRSNLMATFDGYEQQHV-TYSQHIQRQIDEVE-RKIDEFRHGPSSGPASHHPNAP 313

  Fly   378 TTKLQPSVAPMLPPTHDKVVVKKYDPKATQPKQAP----------------------MPTDEYLI 420
            .:.::.|               ::|.......:.|                      ||.||..:
 Worm   314 LSNMRRS---------------RFDQAPKHSAERPHASVSNTWNQNDQQDDGEDIDGMPFDEENL 363

  Fly   421 SPITGEK----IPASKVSEHMRIGL-----LDPRWVEQRDK--HTVEKINQDNVFAAGTAIEASL 474
            .|   :|    :||..::..:.:..     |||..:|....  .:...:...|:|..|..::.:|
 Worm   364 KP---QKSYMALPAGIMTPLVSMNSVMYEPLDPEELEMPASVPPSSRLLAAKNMFHKGVEMDIAL 425

  Fly   475 KQ--LAERRTDIFGVGD--EETVIGKKLGEEETKKDDRVTWDGHTSSVE-------AATRAARAN 528
            ..  :.|..|::....:  ||....||..||:.|           .|||       :||...|.:
 Worm   426 ADGAITEDPTNLKYPLEFLEEKARIKKTFEEKQK-----------CSVEEFITNRPSATDRERFD 479

  Fly   529 ITL----EEQIHQIHKV-----------KGLLPDEEKEKIGPK--PVGNKATLSAPPQPSTKSQH 576
            .|.    |:||.:|.|.           :.|..|.|..:...:  |..:|.:.|....||.:.:.
 Worm   480 KTRKLKEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQ 544

  Fly   577 SHSSQSQHHQGGGGGHHGHHNPHHHHPPHQQAPPHQSHHHHPPQQPQPVMQLMQLRPTMMQPPFG 641
            ..||.|....|...         ......:::.|.:....:..|:                   |
 Worm   545 RSSSNSSRSSGSSS---------RSSSSSRKSSPERGRDSNIGQR-------------------G 581

  Fly   642 AGGGGY 647
            .||||:
 Worm   582 YGGGGF 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818
Surp 150..200 CDD:280053 14/90 (16%)
PRP21_like_P 227..479 CDD:289034 49/315 (16%)
SF3a120_C 709..784 CDD:176395
UBQ 713..777 CDD:214563
tag-65NP_506386.1 CTD_bind 165..226 CDD:282648 16/90 (18%)
G_patch 602..649 CDD:197727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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