DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a1 and SF3A1

DIOPT Version :10

Sequence 1:NP_650583.1 Gene:Sf3a1 / 42048 FlyBaseID:FBgn0266917 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_005868.1 Gene:SF3A1 / 10291 HGNCID:10765 Length:793 Species:Homo sapiens


Alignment Length:841 Identity:430/841 - (51%)
Similarity:541/841 - (64%) Gaps:131/841 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EANEEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLN 71
            :..||:..:.:..:.|.|::|||||||||||||||||||||||||||||||||||:.||||||||
Human    21 QPTEEEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLN 85

  Fly    72 GGDPYHAYYRHKVNEFREGN-DAGITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEF 135
            ..|||||||||||:||:||. .....|:..:.|....:..||..|::..||:::..|||||||||
Human    86 PNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEF 150

  Fly   136 EFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQY 200
            |||||||||||.|||:|||||||||||||||||.||.:||||:||||||||||||.|||||:|||
Human   151 EFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQY 215

  Fly   201 TKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERERVAYAQIDW 265
            ||:|||||.|..||:.|:...|    :||:||.||..|.:.||.:|::|||:.|:||||||||||
Human   216 TKILIPPKGLFSKLKKEAENPR----EVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDW 276

  Fly   266 HDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERL--MDEEGDTEMQIESDDEGDSQANNLL 328
            ||||||||||:||.|.|||||||.|:|:|||:|::||.  ..|..:.||::|||:|.|.|     
Human   277 HDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQ----- 336

  Fly   329 DSGLKLSQMENRVGIQMKNVSSYGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPSVAPM---LP 390
                                ....:|......:||||||||.|.||:.......|...||   ||
Human   337 --------------------EKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLP 381

  Fly   391 PTHDKVVVKK-YDPKATQP-KQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQRDKH 453
            ||.|:|:|:| |||||::| ..||.| ||||:||||||||||||:.||||||||||||:||||:.
Human   382 PTPDQVIVRKDYDPKASKPLPPAPAP-DEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRS 445

  Fly   454 TVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKK-DDRVTWDGHTSS 517
            ..||.:.|.|:|.|..||:|||||||||||||||  |||.||||:||||.:| :::||||||:.|
Human   446 IREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQKPEEKVTWDGHSGS 508

  Fly   518 VEAATRAARANITLEEQIHQIHKVKGLLP-DEEKEKIGP-KPVGNKATLSAPPQPSTKSQHSHSS 580
            :....:||:|||||:|||..|||.|||:| |:.|||||| ||  |:.. ..||.||:.:....|:
Human   509 MARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKP--NEIP-QQPPPPSSATNIPSSA 570

  Fly   581 QSQHHQGGGGGHHGHHNPHHHHPPHQQAPPHQSHHHHPPQQPQPV-MQLMQLRPTMMQPPFGAGG 644
                                  ||....|       .||..|.|| ..::...|.|.:||..:  
Human   571 ----------------------PPITSVP-------RPPTMPPPVRTTVVSAVPVMPRPPMAS-- 604

  Fly   645 GGYMNMQPGG-----------------------------------IPQQIAPAPPV--------- 665
              .:.:.||.                                   :|....|||||         
Human   605 --VVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPM 667

  Fly   666 ------DIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQVLVPN-SDKSEWKLNGQMIAVTMA 723
                  ..||:||.|||:::||:|:||.:|:..:|.||:|:|.||| .||:|||||||::..|:.
Human   668 PPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP 732

  Fly   724 LSEPIANLKTKLQDETGMPPAKQKIFYEGMFFKDSNTMAFYNLVNGTTVHLQVKERGGRKK 784
            |::.::.:|.|:.:.||||..|||:.|||:|.||||::|:||:.||..:||.:||||||||
Human   733 LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a1NP_650583.1 SWAP 36..89 CDD:197818 47/52 (90%)
Surp 150..200 CDD:460339 42/49 (86%)
PRP21_like_P 228..480 CDD:403444 139/258 (54%)
Ubl_SF3a120 696..777 CDD:340498 42/81 (52%)
SF3A1NP_005868.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 5/21 (24%)
SWAP 50..103 CDD:197818 47/52 (90%)
SURP motif 1 52..94 37/41 (90%)
Surp 165..215 CDD:460339 42/49 (86%)
SURP motif 2 166..208 35/41 (85%)
PRP21_like_P 232..472 CDD:403444 141/269 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..428 57/135 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 488..518 14/29 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 530..584 26/85 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 665..688 7/22 (32%)
Required and sufficient for nuclear import. /evidence=ECO:0000269|PubMed:21349847 680..702 10/21 (48%)
Ubl_SF3a120 704..786 CDD:340498 42/81 (52%)

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