DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EMC2B and Emc2

DIOPT Version :10

Sequence 1:NP_650580.1 Gene:EMC2B / 42045 FlyBaseID:FBgn0038461 Length:282 Species:Drosophila melanogaster
Sequence 2:NP_001107257.1 Gene:Emc2 / 362905 RGDID:1310430 Length:297 Species:Rattus norvegicus


Alignment Length:285 Identity:126/285 - (44%)
Similarity:197/285 - (69%) Gaps:13/285 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNERHLILEQVIIAALDTARFDIATK 72
            ::|.::||:.|.||||..|:||:::::...::.|...|.|::..:|.|||:|||||..|.|:|..
  Rat    10 VTWEEMRDKMRKWREENSRNSEQIMEVGEELINDYASKLGDDIWIIYEQVMIAALDYGRDDLALF 74

  Fly    73 CTKQLALEFPGSLRVMKFKAMRYEALEQYDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLE 137
            |.::|..:||||.||.:...||:||:|:||:|.::.|.|:.:|.||.|.|||||||.||:|:.:|
  Rat    75 CLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVE 139

  Fly   138 AIKELNEYLKKFMSDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTMGG 202
            ||:||||||::|:.||||||||..:|:.|.::.|||||:||:::.|||:||..|:.||::||.||
  Rat   140 AIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGG 204

  Fly   203 VENMESARTYYSQALKLNPHNLRALYGIYLCCNHL-DNSRAVSSKRKELQKLSQWALEQL----- 261
            :||:|.:|.|::||||||..|:|||:|:|:..:|: .|.:|.:..:|:..:.:.||..|:     
  Rat   205 LENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKMKKDNIRYAGWAANQINRAYQ 269

  Fly   262 -------LTKQTIVPLEAAFGNLEI 279
                   .||.::..:|.....|:|
  Rat   270 FAGRSKKETKSSLKAVEDMLETLQI 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC2BNP_650580.1 Spy 49..>243 CDD:443119 102/194 (53%)
TPR repeat 86..113 CDD:276809 12/26 (46%)
TPR repeat 154..181 CDD:276809 15/26 (58%)
TPR repeat 186..219 CDD:276809 17/32 (53%)
Emc2NP_001107257.1 Spy 55..>235 CDD:443119 100/179 (56%)
TPR 1. /evidence=ECO:0000255 87..120 13/32 (41%)
TPR repeat 120..150 CDD:276809 21/29 (72%)
TPR 2. /evidence=ECO:0000255 155..188 18/32 (56%)
TPR repeat 155..182 CDD:276809 16/26 (62%)
TPR repeat 188..221 CDD:276809 17/32 (53%)
TPR 3. /evidence=ECO:0000255 192..225 18/32 (56%)

Return to query results.
Submit another query.