Sequence 1: | NP_732176.1 | Gene: | abd-A / 42037 | FlyBaseID: | FBgn0000014 | Length: | 590 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_203129.1 | Gene: | LHX4 / 89884 | HGNCID: | 21734 | Length: | 390 | Species: | Homo sapiens |
Alignment Length: | 262 | Identity: | 56/262 - (21%) |
---|---|---|---|
Similarity: | 91/262 - (34%) | Gaps: | 77/262 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 384 RVVC-GDF-----NGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQI 442
Fly 443 KIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKSAQQNKQ-------VQQQQQQQQ 500
Fly 501 QQQQQQQQQH---------------------------QQQQ-----------QQPQDHHSIIAHN 527
Fly 528 P--GHLHHSVVGQNDLKLGLGMGVGVGVGGIGPGIGGG------LGGNLGMM-------SALDKS 577
Fly 578 NH 579 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
abd-A | NP_732176.1 | Homeobox | 402..454 | CDD:278475 | 16/51 (31%) |
Abdominal-A | 456..478 | CDD:289192 | 4/21 (19%) | ||
LHX4 | NP_203129.1 | LIM1_Lhx4 | 30..81 | CDD:188852 | |
LIM2_Lhx3_Lhx4 | 89..144 | CDD:188762 | 3/6 (50%) | ||
Homeobox | 160..213 | CDD:306543 | 16/52 (31%) | ||
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536 | 161..181 | 5/19 (26%) | |||
Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 | 199..211 | 7/11 (64%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 230..253 | 4/22 (18%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 356..390 | 8/32 (25%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |