DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and cdx4

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_571184.2 Gene:cdx4 / 798281 ZFINID:ZDB-GENE-980526-330 Length:270 Species:Danio rerio


Alignment Length:223 Identity:72/223 - (32%)
Similarity:93/223 - (41%) Gaps:63/223 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 LEDKSCSRYTDTVMNSYQSMSVPAS---ASAQFAQF--YQHATAAASAVSAASAGAIGVD----- 338
            |.:|..|.|....:.. ..:|:|..   ::.|::.|  |.|.....:  .|.||||.|..     
Zfish     6 LLEKEASMYHQGAVRR-SGISLPPQNFVSTPQYSDFTGYHHVPNMET--HAQSAGAWGAPYGAPR 67

  Fly   339 ------SLG--NACTQPASGVMPGA--------GGAGGAGIADLP-------------------R 368
                  |||  |:.:.|.|...||.        ....|.|.|.||                   .
Zfish    68 EDWGAYSLGPPNSISAPMSNSSPGPVSYCSPDYNTMHGPGSAVLPPPPENIPVAQLSPERERRNS 132

  Fly   369 YPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAH 433
            |.||:.|          |.....|... .:.:.|..||..|.||||||||||.|:|.||:.|:|.
Zfish   133 YQWMSKT----------VQSSSTGKTR-TKEKYRVVYTDHQRLELEKEFHFNRYITIRRKSELAV 186

  Fly   434 ALCLTERQIKIWFQNRRMK----LKKEL 457
            .|.|:|||:||||||||.|    :||:|
Zfish   187 NLGLSERQVKIWFQNRRAKERKLIKKKL 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 34/55 (62%)
Abdominal-A 456..478 CDD:289192 1/2 (50%)
cdx4NP_571184.2 Caudal_act 15..138 CDD:282574 28/125 (22%)
Homeobox 155..207 CDD:278475 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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