DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and gsx1

DIOPT Version :10

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001039254.1 Gene:gsx1 / 734120 XenbaseID:XB-GENE-855502 Length:243 Species:Xenopus tropicalis


Alignment Length:218 Identity:70/218 - (32%)
Similarity:92/218 - (42%) Gaps:70/218 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 MYPYVSNHPSS--HGGLSGMAGFTGLEDKSCSRYTDTVMNSYQS-------MSVPAS-------- 308
            ::|| :.||:.  ||..:|          ||        :|.:|       |.|.||        
 Frog    26 LFPY-AVHPTHPLHGLPAG----------SC--------HSRKSGLLCVCPMCVTASHLHPPPPG 71

  Fly   309 ---ASAQFAQF-YQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRY 369
               ..|.|:.| .|:..|......:||.| |.| |.|.|..|.|                    |
 Frog    72 IPLLKASFSSFGTQYCPAGLGRQHSASTG-INV-SHGPALYQAA--------------------Y 114

  Fly   370 PWMTLTDWMGSPFE-RVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAH 433
            |       :..|.: ..:..|.:.......:|.|..:|..|.||||:||..|.||:|.||||||.
 Frog   115 P-------LPDPRQFHCISVDSSPSQLSSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIAT 172

  Fly   434 ALCLTERQIKIWFQNRRMKLKKE 456
            .|.|:|:|:||||||||:|.|||
 Frog   173 YLNLSEKQVKIWFQNRRVKHKKE 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649 33/55 (60%)
Abdominal-A 456..478 CDD:403567 1/1 (100%)
gsx1NP_001039254.1 homeobox 137..196 36/59 (61%)
Homeodomain 138..194 CDD:459649 33/55 (60%)

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