DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and Tlx2

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001165596.1 Gene:Tlx2 / 680117 RGDID:1595506 Length:284 Species:Rattus norvegicus


Alignment Length:207 Identity:61/207 - (29%)
Similarity:88/207 - (42%) Gaps:43/207 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 SAQFAQFYQHATAAASAVSAAS---------AGAIGVDSLGNACTQPASGVMP------GAGGAG 359
            ||.|:..:...:..|.|.|.||         .|.|.|.:.......|.||..|      |.||.|
  Rat    47 SAAFSSGFHGTSGYAPAGSLASLPRGSGVGPGGVIRVPAHRPVPVPPPSGAAPAVAGPSGLGGPG 111

  Fly   360 G-AGIADLPRYPWM---------TLTDWMGSPFE--RVVCGDFNGPNGCPRRRGRQTYTRFQTLE 412
            | ||:.    :|||         .||..: |||.  |.:...:.......|::.|.:::|.|.||
  Rat   112 GLAGLT----FPWMDSGRRFAKDRLTAAL-SPFSGTRRIGHPYQNRTPPKRKKPRTSFSRSQVLE 171

  Fly   413 LEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKM 477
            ||:.|....||....|..:|.||.:|:.|:|.||||||.|.:::           ..:..|.|:.
  Rat   172 LERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ-----------TAEEREAERH 225

  Fly   478 KAQETMKSAQQN 489
            :|...:...||:
  Rat   226 RAGRLLLHLQQD 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 24/51 (47%)
Abdominal-A 456..478 CDD:289192 2/21 (10%)
Tlx2NP_001165596.1 Homeobox 160..213 CDD:278475 24/52 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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