DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and hoxa1a

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_571611.1 Gene:hoxa1a / 58051 ZFINID:ZDB-GENE-000823-5 Length:329 Species:Danio rerio


Alignment Length:466 Identity:110/466 - (23%)
Similarity:150/466 - (32%) Gaps:195/466 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 ASASASVSASSSSNNNSS---------NTIAGSNTSNTNNSSSSPSSSSNNNSNLNLSGGSLS-- 99
            :..|.||.|....:..|:         |:.:|.....:|.||....:|....:....|.|:||  
Zfish    18 SGGSCSVRAFHGDHGLSTFQSSCAVRLNSCSGDERFMSNISSQDVINSQPQQAGSYQSPGTLSIT 82

  Fly   100 ----PSHLSQHL--GQSPHS---PVSSSSPFQQHHPQVQQQHLNHQQQQHLHHQQQQHHHQYSSL 155
                ||:.:|..  |.:.::   .|.||..|.|..|.|...:::....||.||:     |.||| 
Zfish    83 YSAHPSYGTQSFCTGYNHYALNQDVESSVSFPQCGPLVYSGNISSTVVQHRHHR-----HGYSS- 141

  Fly   156 SAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPSASGSSSLHRSLN 220
                                  .:.|.|.|......:.|||                        
Zfish   142 ----------------------GNVHLHGQFQYGSATYGNS------------------------ 160

  Fly   221 DNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLE 285
                                                             |....|:.:||     
Zfish   161 -------------------------------------------------SDQANLTFVAG----- 171

  Fly   286 DKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPAS- 349
               ||       |....:.||           .|                      :||..|.| 
Zfish   172 ---CS-------NPLSPLHVP-----------HH----------------------DACCSPLSD 193

  Fly   350 GVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELE 414
            ||..|            ..:.||.:   ..:|.:....|:: |..|.| ...|..::..|..|||
Zfish   194 GVPTG------------QTFDWMKV---KRNPPKTGKAGEY-GFGGQP-NTVRTNFSTKQLTELE 241

  Fly   415 KEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK---KELRAVKEINEQARRDREEQEK 476
            ||||||.||||.||:|||.:|.|.|.|:||||||||||.|   ||....|.::||    ::..||
Zfish   242 KEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPKSLSEQ----KDGLEK 302

  Fly   477 MK-AQETMKSA 486
            .: |.|...||
Zfish   303 TEDASEKSPSA 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 34/51 (67%)
Abdominal-A 456..478 CDD:289192 6/21 (29%)
hoxa1aNP_571611.1 Antp-type hexapeptide 200..205 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..227 5/20 (25%)
Homeobox 229..281 CDD:278475 34/51 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 277..329 15/41 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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