DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and hoxa4a

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_571610.1 Gene:hoxa4a / 58050 ZFINID:ZDB-GENE-000823-4 Length:245 Species:Danio rerio


Alignment Length:230 Identity:82/230 - (35%)
Similarity:105/230 - (45%) Gaps:46/230 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 GFTGLEDKSCSRYTDTVMNSYQSMSVPAS--ASAQFAQFYQHATAAASAVS------AASAGAIG 336
            ||...|:.|..|      ::||..|....  ::.....|.....|...:||      ..:...:|
Zfish    43 GFPHHEEASYPR------SNYQEQSYDYGNVSTNDLNDFSDRHHAQPQSVSQNHGPRLTTESCVG 101

  Fly   337 VDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRG 401
            .|  ||......|..:||:..:....:     ||||.      ......|...::|  |.| :|.
Zfish   102 SD--GNKDCSLVSDALPGSQKSKEPVV-----YPWMK------KVHVNTVTASYSG--GVP-KRS 150

  Fly   402 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQ 466
            |..|||.|.||||||||||.|||||||:||||.:||:|||:||||||||||.||:   .|..|.:
Zfish   151 RTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWFQNRRMKWKKD---HKLPNTK 212

  Fly   467 ARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQ 501
            .|             :..||..|..|:....||||
Zfish   213 IR-------------SSSSAPSNHHVKTDATQQQQ 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 41/51 (80%)
Abdominal-A 456..478 CDD:289192 3/21 (14%)
hoxa4aNP_571610.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..99 12/61 (20%)
Antp-type hexapeptide 126..131 3/9 (33%)
Homeobox 150..203 CDD:278475 41/52 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 205..245 11/46 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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