DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and hoxc9

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001017256.1 Gene:hoxc9 / 550010 XenbaseID:XB-GENE-482330 Length:100 Species:Xenopus tropicalis


Alignment Length:106 Identity:48/106 - (45%)
Similarity:62/106 - (58%) Gaps:28/106 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 GDFNGPNGCPR--------------------RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIA 432
            |:|..|:|...                    |:.|..||::|||||||||.||.||||.||.|:|
 Frog     2 GEFLAPHGGKEGHLQLQKDNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVA 66

  Fly   433 HALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREE 473
            ..|.|||||:||||||||||:||       :|:: :.|:|:
 Frog    67 RVLNLTERQVKIWFQNRRMKMKK-------MNKE-KPDKEQ 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 38/51 (75%)
Abdominal-A 456..478 CDD:289192 3/18 (17%)
hoxc9NP_001017256.1 Homeobox 35..81 CDD:278475 31/45 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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