DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and toy

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster


Alignment Length:296 Identity:67/296 - (22%)
Similarity:96/296 - (32%) Gaps:108/296 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TPPNSSSAAVAAALAAAAASASASVSASSSSNNNSSNTIAG-SNTSNTNNS-------------- 77
            |..||:...|.:|:..|..::||.||.|....:|....:.| :||::|::.              
  Fly   359 TSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESPPLQPAAPRLPLN 423

  Fly    78 -------SSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSP---HSPVSSSSPFQQHHPQVQQQH 132
                   ||.|...:....|.|.|.||::||.|.|. ...|   |.|:|..||:...|      |
  Fly   424 SGFNTMYSSIPQPIATMAENYNSSLGSMTPSCLQQR-DAYPYMFHDPLSLGSPYVSAH------H 481

  Fly   133 LNHQQQQHLHHQQQQHHHQYSS---------------LSAALQLQQQQ----------------- 165
            .|........|||...|..|::               :|..:|:..|.                 
  Fly   482 RNTACNPSAAHQQPPQHGVYTNSSPMPSSNTGVISAGVSVPVQISTQNVSDLTGSNYWPRLQXSS 546

  Fly   166 ------HHISKLAAAAV-------ASHGHAHQQLLLT---------PPSAGNSQAGDSS------ 202
                  .|:||..|||:       .||.|..:..:::         |||........||      
  Fly   547 IFGSPLDHLSKATAAAIIAAQAAEKSHKHRKEHSIVSIHTTKRKKNPPSLKRQTTCCSSRYLNMT 611

  Fly   203 ----------------CSPSPSASGSSSLHRSLNDN 222
                            .|.:|..||...|..|.|.|
  Fly   612 FGAGKDVDVVIGQGLIVSLTPHISGKPELFGSPNVN 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475
Abdominal-A 456..478 CDD:289192
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 3/8 (38%)
Homeobox 269..322 CDD:395001
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.