DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and Ptx1

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster


Alignment Length:436 Identity:88/436 - (20%)
Similarity:124/436 - (28%) Gaps:154/436 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 NSSSAAVAAALAAAAASASAS--------VSASSSSNNNSSNTIAGSNTSNTNNSSSSPSSSSNN 87
            |.....|:.||....|.::.|        |||.:::...|:.:...:.|::|..||.|..||:.|
  Fly    35 NGGGGVVSGALNGLEAMSAESTGLCLQDLVSAGTANGAGSAGSAESATTTSTALSSGSTGSSTVN 99

  Fly    88 NSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHHPQVQQQHLNHQQQQHLHHQQQQHHHQY 152
            ....:.||.....||.|.|   ...|.||.|.......|.....||:|...|.|.....||.|. 
  Fly   100 GGGSSTSGTEHLHSHHSLH---DSSSSVSISPAISSLMPISSLSHLHHSAGQDLVGGYSQHPHH- 160

  Fly   153 SSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPSASGSSSLHR 217
                                 ..|..|...|:.|......|......||..|.:..|:...|.| 
  Fly   161 ---------------------TVVPPHTPKHEPLEKLRIWAETGDFRDSHSSMTAVANSLDSTH- 203

  Fly   218 SLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFT 282
             ||:....|.|:.::.|.                                               
  Fly   204 -LNNFQTSSTSSISNRSR----------------------------------------------- 220

  Fly   283 GLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQP 347
              :.|..:|                                  :|:..:.....:.|.|:.....
  Fly   221 --DRKDGNR----------------------------------SVNETTIKTENISSSGHDEPMT 249

  Fly   348 ASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLE 412
            .||..|.                                    |......:||.|..:|..|..|
  Fly   250 TSGEEPK------------------------------------NDKKNKRQRRQRTHFTSQQLQE 278

  Fly   413 LEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 458
            ||..|..|.|.....|.|||....|||.::::||:|||.|.:|..|
  Fly   279 LEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWRKRER 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 22/51 (43%)
Abdominal-A 456..478 CDD:289192 1/3 (33%)
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 22/51 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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