DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and ro

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:371 Identity:95/371 - (25%)
Similarity:134/371 - (36%) Gaps:110/371 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 DNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHG------------ 273
            |.|||...:.:....|::...:.....::....|    .::|.::....|.:|            
  Fly    12 DGSPGIKRSDSLDPIANTTILSVPQRPSSPRQFF----ERLYGHLETRSSENGEIDVGTHAHKPP 72

  Fly   274 ---------GLSGMAGFTGLEDKSCSRYTDTVMNSY-QSMSVPASASAQFAQFYQHATAAASAVS 328
                     |.|..:....:.|:..|.......:.| .:...|...|.|..|.:.|.......|.
  Fly    73 PCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLVH 137

  Fly   329 AASAGAIGVDSLGNACTQPASGVM-PGAGGAGGAGIADLPR-YPWMTLTDWMGSPFERVVCGDFN 391
                             |..|.|. |.|..||||....||. :|       .|.|.:......|:
  Fly   138 -----------------QKLSYVSPPPAIAAGGAANPVLPHAFP-------AGFPSDPHFSAGFS 178

  Fly   392 GPNGCPRRR-GRQ-----TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 450
            ......||: |||     |::..|||.||.|||.|.|::|.||.|:|..|.|||.||||||||||
  Fly   179 AFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRR 243

  Fly   451 MKLKKELRAVKEINEQARRDREEQEKMKAQETMKS------------------------------ 485
            .|.|:        .|:|:.|:..:..:.|...|.|                              
  Fly   244 AKDKR--------IEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAA 300

  Fly   486 ------AQQNKQ--------VQQQQQQQQQQQQQQQQQHQQQQQQP 517
                  .:.|.|        .|.|:||||:||||||||.:::...|
  Fly   301 ATPAALPKDNTQDANFIDIDDQFQRQQQQKQQQQQQQQRRRETTTP 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 33/56 (59%)
Abdominal-A 456..478 CDD:289192 3/21 (14%)
roNP_524521.1 Homeobox 196..247 CDD:278475 31/50 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439742
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.740

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