DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and Ubx

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:411 Identity:139/411 - (33%)
Similarity:177/411 - (43%) Gaps:99/411 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 HHHQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPSASGS 212
            |.||    :..:.:....||....:|||.|..|.        |.|.|          .||.|  :
  Fly    14 HPHQ----ATGMAMGSGGHHDQTASAAAAAYRGF--------PLSLG----------MSPYA--N 54

  Fly   213 SSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSH----- 272
            ..|.|:..| ||..||.:|   |.:.:....|.|......:........|..:.|...|:     
  Fly    55 HHLQRTTQD-SPYDASITA---ACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGG 115

  Fly   273 -----GGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHA-TAAASAVS--A 329
                 ||.:|..|..|..:...:...:...|....|.|..||....::...:. |:..|.||  .
  Fly   116 GGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG 180

  Fly   330 ASAGAIGVDSLGNACTQPASGVMPGAGGAGG-----------------AGIADLPR------YPW 371
            .|||.....|.||.   .|.||..|.|.||.                 |..:.|.:      |||
  Fly   181 GSAGGNVSVSGGNG---NAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPW 242

  Fly   372 MTL------------------------TDWMGSPFERVVCG----DFNGPNGCPRRRGRQTYTRF 408
            |.:                        || ||..:...:.|    |:.|.||. ||||||||||:
  Fly   243 MAIAGECPEDPTKSKIRSDLTQYGGISTD-MGKRYSESLAGSLLPDWLGTNGL-RRRGRQTYTRY 305

  Fly   409 QTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREE 473
            ||||||||||.|||||||||||:|||||||||||||||||||||||||::|:||:|||.:  :.:
  Fly   306 QTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEK--QAQ 368

  Fly   474 QEKMKAQETMKSAQQNKQVQQ 494
            .:|..|.....:|.|...:.|
  Fly   369 AQKAAAAAAAAAAVQGGHLDQ 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 48/51 (94%)
Abdominal-A 456..478 CDD:289192 8/21 (38%)
UbxNP_536752.1 Homeobox 299..352 CDD:395001 49/52 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131271at6656
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45659
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.920

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