DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and Antp

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster


Alignment Length:439 Identity:129/439 - (29%)
Similarity:158/439 - (35%) Gaps:138/439 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 TSNTNNSSSSPSSSSNNNSNLNLSGG-----------SLSPSHLSQ---HLGQSPHS--PVSSSS 119
            |.:|||..|..|..:|:....::..|           :....|.||   |.|..|:.  |.....
  Fly     2 TMSTNNCESMTSYFTNSYMGADMHHGHYPGNGVTDLDAQQMHHYSQNANHQGNMPYPRFPPYDRM 66

  Fly   120 PF---------QQHH---------------------------PQVQQQHLNHQQQQHLHHQQQQH 148
            |:         |||.                           ||.|||    ||||...:||||.
  Fly    67 PYYNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTNGQLGVPQQQQQ----QQQQPSQNQQQQQ 127

  Fly   149 HHQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPSASGSS 213
            ..|     |..|||||...:::...       |..||                  ...|....|.
  Fly   128 AQQ-----APQQLQQQLPQVTQQVT-------HPQQQ------------------QQQPVVYASC 162

  Fly   214 SLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGM 278
            .|              .|:......|....:.......|...:......|:...||.:..|.:.:
  Fly   163 KL--------------QAAVGGLGMVPEGGSPPLVDQMSGHHMNAQMTLPHHMGHPQAQLGYTDV 213

  Fly   279 AGFTGLEDKSCSRYTDTVMNSYQSMS-VPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGN 342
                |:.|.:........|..||..| ||...:......:|     .........|..|..:..:
  Fly   214 ----GVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQ-----GQGPPQMHQGHPGQHTPPS 269

  Fly   343 ACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTR 407
            ......|..||.            |.||||.      |.|.:  |.:        |:||||||||
  Fly   270 QNPNSQSSGMPS------------PLYPWMR------SQFGK--CQE--------RKRGRQTYTR 306

  Fly   408 FQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 456
            :||||||||||||.|||||||||||||||||||||||||||||||.|||
  Fly   307 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 49/51 (96%)
Abdominal-A 456..478 CDD:289192 1/1 (100%)
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 38/195 (19%)
Homeobox 301..354 CDD:395001 49/52 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2996
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D544833at33208
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45659
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.870

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