Protein Alignment abd-A and cdx1a

DIOPT Version :9

• Sequence 1: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 211
• Identity: 66/211 - (31%)
• Similarity: 89/211 - (42%)
• Gaps: 51/211 - (24%)

  Fly   288 SCSRYTDTVMNS----YQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPA 348
            |.|...||.|..    :.::|.|            |.....||.....:|.....:|||......
Zfish     2 SVSYLLDTAMYGNPARHLNLSQP------------HLNVYPSAPYPDYSGYHPGPALGNDLHHTG 54

  Fly   349 SGVMPGAG-------------GAG------GAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPN 394
            |...||.|             |.|      |..::.||......|:   |:|.:|....|:...:
Zfish    55 SSWSPGFGPGSRDDWPPLYGHGTGHSLPANGVEVSVLPSVDQGLLS---GAPVDREEPQDWMRRS 116

  Fly   395 GCPRRRGRQT---------YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 450
            ..|...|.:|         |:..|.|||||||||:.|:|.||:.|:|..|.|:|||:||||||||
Zfish   117 AVPTNPGGKTRTKDKYRVVYSDVQRLELEKEFHFSRYITIRRKAELAGTLNLSERQVKIWFQNRR 181

  Fly   451 MK----LKKELRAVKE 462
            .|    .||.|:.|::
Zfish   182 AKERKMNKKRLQQVQQ 197

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abd-A	NP_732176.1	Homeobox	402..454	CDD:278475	32/64 (50%)
		Abdominal-A	456..478	CDD:289192	2/7 (29%)
cdx1a	NP_998001.2	Caudal_act	11..115	CDD:282574	24/118 (20%)
		COG5576	<122..227	CDD:227863	37/76 (49%)
		Homeobox	133..185	CDD:278475	31/51 (61%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910