DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and hoxb9

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_988879.1 Gene:hoxb9 / 394474 XenbaseID:XB-GENE-963094 Length:247 Species:Xenopus tropicalis


Alignment Length:280 Identity:75/280 - (26%)
Similarity:113/280 - (40%) Gaps:60/280 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 DSSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSF-------AIP 257
            :|..:|:...||...        ||..|:.||.:......:.:....|...|:|:       |.|
 Frog    19 ESEEAPAAKFSGQYP--------SPRPAAHSAHSEPLDFPSCSFQPKAPVFSASWSPLNPHPASP 75

  Fly   258 TSKMY-PYV-SNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHA 320
            ...:| ||: ...|:..|..  :.|:.....::.:......:.|...:..|.......||.|...
 Frog    76 LPSVYHPYIQQGAPTPEGRY--LRGWLEPLQRAENGPGQGTVKSEPLLGPPGELDKLGAQQYNLG 138

  Fly   321 TAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERV 385
            :.||.            :......|.|.:.:..|:|.......:: |...|:             
 Frog   139 SPAAR------------EDANERATFPDNKLCEGSGDKDRTHQSN-PSANWL------------- 177

  Fly   386 VCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 450
                    :....|:.|..||::|||||||||.||.||||.||.|:|..|.|:|||:||||||||
 Frog   178 --------HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRR 234

  Fly   451 MKLKKELRAVKEINEQARRD 470
            ||:||       :|:...:|
 Frog   235 MKMKK-------LNKDQSKD 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 37/51 (73%)
Abdominal-A 456..478 CDD:289192 2/15 (13%)
hoxb9NP_988879.1 Hox9_act 1..169 CDD:368024 31/171 (18%)
Homeobox 185..239 CDD:365835 37/53 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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