Protein Alignment abd-A and Hoxc9

DIOPT Version :9

• Sequence 1: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001094377.1
• Gene: Hoxc9 / 368178
• RGDID: 1595784
• Length: 260
• Species: Rattus norvegicus
• Alignment Length: 294
• Identity: 84/294 - (28%)
• Similarity: 114/294 - (38%)
• Gaps: 107/294 - (36%)

  Fly   224 PGSASASASASAASSV-------AAAAAAAAAAASSSFA-IPTSKMYPYVSNHPSSHGGLSGMAG 280
            |.:.:..|:|..:..|       :.:.|...|..|:|:| :|:.....|....|..|.|..
  Rat    29 PATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGAD---- 89

  Fly   281 FTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACT 345
                     :||..|.:.       |.|.:..|..|
  Rat    90 ---------TRYMRTWLE-------PLSGAVSFPSF----------------------------- 109

  Fly   346 QPASG----VMPGA--GGAGGAGIADLPRYPWMTLTDWM-GSPFE--------------RVVCG- 388
             ||.|    :.|.|  |.....|..|...||     |:| |||.|              ..:.|
  Rat   110 -PAGGRHYALKPDAYPGRRADCGPGDGRSYP-----DYMYGSPGELRDRAPQTLPSPEADALAGS 168

  Fly   389 ---------DFNGP-----NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTE 439
                     |.:.|     :....|:.|..||::|||||||||.||.||||.||.|:|..|.|||
  Rat   169 KHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTE 233

  Fly   440 RQIKIWFQNRRMKLKKELRAVKEINEQARRDREE 473
            ||:||||||||||:||       :|:: :.|:|:
  Rat   234 RQVKIWFQNRRMKMKK-------MNKE-KTDKEQ 259

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abd-A	NP_732176.1	Homeobox	402..454	CDD:278475	38/51 (75%)
		Abdominal-A	456..478	CDD:289192	3/18 (17%)
Hoxc9	NP_001094377.1	Hox9_act	1..179	CDD:398350	38/204 (19%)
		HOX	192..241	CDD:197696	32/48 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	2.000