Protein Alignment abd-A and Gsx2

DIOPT Version :10

• Sequence 1: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001131035.2
• Gene: Gsx2 / 364140
• RGDID: 1308047
• Length: 305
• Species: Rattus norvegicus
• Alignment Length: 517
• Identity: 118/517 - (22%)
• Similarity: 167/517 - (32%)
• Gaps: 240/517 - (46%)

  Fly     1 MSK-FVFDSML--------PKYPQFQP----FISSHHLTTTPPNSSSAAVAAALAAAAASASASV 52
            ||: |..||::        |..|:..|    ||        |....|..|.:.......|..:..
  Rat     1 MSRSFYVDSLIIKDSSRPAPSLPESHPGPDFFI--------PLGMPSPLVMSVSGPGCPSRKSGA 57

  Fly    53 ----SASSSSNNNSSNTIAGSNTSNTNNSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHS 113
                ....:|:.:||...||:....|..:.::            ::||.::....:..|.:|..|
  Rat    58 FCVCPLCVTSHLHSSRPPAGAGGGATGTAGAA------------VAGGGVAGGTGALPLLKSQFS 110

  Fly   114 PVSSSSPFQQHHPQVQQQHLNHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVAS 178
            |....:.|   .|:|  .|.:|      ||...||||               ||
  Rat   111 PGPGDAQF---CPRV--SHAHH------HHHAPQHHH---------------HH----------- 138

  Fly   179 HGHAHQQLLLTPPSAGNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAA 243
              |..||                                      ||||:|:|:|      ||||
  Rat   139 --HQPQQ--------------------------------------PGSAAAAAAA------AAAA 157

  Fly   244 AAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPAS 308
            ||||||.                .||..|                                .|..
  Rat   158 AAAAAAL----------------GHPQHH--------------------------------APVC 174

  Fly   309 ASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMT 373
            |:..:                                                .::|..|:..:|
  Rat   175 AATTY------------------------------------------------NVSDPRRFHCLT 191

  Fly   374 LTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLT 438
            :.   ||...:|       |||   :|.|..:|..|.||||:||..|.||:|.||||||..|.|:
  Rat   192 MG---GSDTSQV-------PNG---KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS 243

  Fly   439 ERQIKIWFQNRRMKLKKELR--------AVKEINEQARRDREEQEKMKAQETMKSAQQNKQV 492
            |:|:||||||||:|.|||.:        :.|.:..||...|.|.|...:.   .||.::|::
  Rat   244 EKQVKIWFQNRRVKHKKEGKGASRNNHASCKCVGSQAHYARSEDEDSLSP---ASANEDKEI 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	33/55 (60%)
		Abdominal-A	456..478	CDD:403567	7/29 (24%)
Gsx2	NP_001131035.2	Homeodomain	204..260	CDD:459649	33/55 (60%)