DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and H2.0

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster


Alignment Length:543 Identity:105/543 - (19%)
Similarity:149/543 - (27%) Gaps:273/543 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LPKYPQFQPFISSHHLTTTPPNSSSAAVAAALAAAAASASASVSASSSSNNNSSNTIAGSNTSNT 74
            |.|.|  .|....|.|.|....:|:..|:.:..:|.::....:|.       |.:.:.||....:
  Fly    32 LAKCP--DPVNVDHELPTKESCASTTIVSTSPTSATSTTKVKLSF-------SVDRLLGSEPEES 87

  Fly    75 N-NSSSSPSS------------------SSNNNSNLNLSGGSLSP------SHLSQHLG------ 108
            : .||||||:                  |..|..:......:|.|      ||....:|      
  Fly    88 HRQSSSSPSTKSCCDGSILACCSFPHCFSQANAESRRFGHATLPPTFTPTSSHTYPFVGLDKLFP 152

  Fly   109 --------------------QSPHSPVSSSSP---FQQHHPQVQQQHLNHQQQ-QHLHHQQQQHH 149
                                .:|..|..:::.   |.||..|..|||.:||.. :|||.|.:...
  Fly   153 GPYMDYKSVLRPTPIRAAEHAAPTYPTLATNALLRFHQHQKQQHQQHHHHQHHPKHLHQQHKPPP 217

  Fly   150 HQYSSLSA---------ALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSP 205
            |..::.||         :|||.|||....          |...||||                  
  Fly   218 HNSTTASALLAPLHSLTSLQLTQQQQRFL----------GKTPQQLL------------------ 254

  Fly   206 SPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPS 270
                                            .:|..:.||||||:|             .|...
  Fly   255 --------------------------------DIAPTSPAAAAAATS-------------QNGAH 274

  Fly   271 SHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAI 335
            .|||.:|.                                                         
  Fly   275 GHGGGNGQ--------------------------------------------------------- 282

  Fly   336 GVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRR 400
                 |||..                                              |.||..:|.
  Fly   283 -----GNASA----------------------------------------------GSNGKRKRS 296

  Fly   401 -GRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEIN 464
             .|..::..|...||.:|....|:|:..|.::|..|.||:.|:|:||||||||.           
  Fly   297 WSRAVFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKW----------- 350

  Fly   465 EQARRDREEQEKMKA-QETMKSA 486
                  |..:|.:|: ||...||
  Fly   351 ------RHTRENLKSGQEKQPSA 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 22/51 (43%)
Abdominal-A 456..478 CDD:289192 2/21 (10%)
H2.0NP_523488.2 Homeobox 298..351 CDD:278475 22/69 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.