DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and HOXD4

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_055436.2 Gene:HOXD4 / 3233 HGNCID:5138 Length:255 Species:Homo sapiens


Alignment Length:296 Identity:88/296 - (29%)
Similarity:104/296 - (35%) Gaps:118/296 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 SRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVD----------SLGNAC 344
            |:|.|......:..........|.|.:|             ..||.|.|          ..|.  
Human    10 SKYVDPKFPPCEEYLQGGYLGEQGADYY-------------GGGAQGADFQPPGLYPRPDFGE-- 59

  Fly   345 TQPASGVMPGAGGA----------GGAG-----------------IADLPR-------------- 368
             ||..|..||.|.|          ||.|                 .|.||.              
Human    60 -QPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPS 123

  Fly   369 ----------YPWMTLTDWMGSPFERVVCGDFNGPN--GCPRRRGRQTYTRFQTLELEKEFHFNH 421
                      ||||          ::|.....| ||  |...:|.|..|||.|.||||||||||.
Human   124 GTALKQPAVVYPWM----------KKVHVNSVN-PNYTGGEPKRSRTAYTRQQVLELEKEFHFNR 177

  Fly   422 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKSA 486
            ||||||||||||.|||:||||||||||||||.||:             .:....|.::..:..|:
Human   178 YLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKD-------------HKLPNTKGRSSSSSSSS 229

  Fly   487 QQNKQVQQQQQQQQQQQQQQQQQHQQQQQQPQDHHS 522
            ..:..|...               |..|...:|||:
Human   230 SCSSSVAPS---------------QHLQPMAKDHHT 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 44/51 (86%)
Abdominal-A 456..478 CDD:289192 1/21 (5%)
HOXD4NP_055436.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..127 21/111 (19%)
Antp-type hexapeptide 133..138 4/14 (29%)
Homeobox 157..210 CDD:306543 44/52 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..255 8/67 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.810

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