DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and emx3

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_571354.1 Gene:emx3 / 30536 ZFINID:ZDB-GENE-990415-53 Length:233 Species:Danio rerio


Alignment Length:138 Identity:44/138 - (31%)
Similarity:65/138 - (47%) Gaps:26/138 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   369 YPWMTLTDWMGSPFERVVCGD--------FNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTR 425
            |||:....::|..|:    ||        .:||.....:|.|..::..|.|.||:.|..|||:..
Zfish   102 YPWVLRNRYLGHRFQ----GDDSSPENLLLHGPFSRKPKRIRTAFSPSQLLRLERAFEKNHYVVG 162

  Fly   426 RRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKSAQQNK 490
            ..|.::|:.|||||.|:|:||||||.|.|              |.:.|:|....|:..|.:|...
Zfish   163 AERKQLANGLCLTETQVKVWFQNRRTKHK--------------RQKLEEESPDPQQKRKGSQHVS 213

  Fly   491 QVQQQQQQ 498
            :.:...||
Zfish   214 RWRVATQQ 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 25/51 (49%)
Abdominal-A 456..478 CDD:289192 3/21 (14%)
emx3NP_571354.1 Homeobox 139..191 CDD:278475 25/51 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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