DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and hoxa10b

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_571230.2 Gene:hoxa10b / 30391 ZFINID:ZDB-GENE-990415-97 Length:347 Species:Danio rerio


Alignment Length:376 Identity:102/376 - (27%)
Similarity:135/376 - (35%) Gaps:141/376 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 LTPPSAGNSQAGDSSCSPSPSASGSSSLHRSL-NDNSPGSASASASASAASSVAAAAAAAAAAAS 251
            |.|||   :.....|||.||  ||:|.|..|| :..|.||.....:                  |
Zfish     8 LLPPS---NYTTKMSCSDSP--SGNSFLVDSLIHGRSEGSGHYYQN------------------S 49

  Fly   252 SSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGL-------------------------------- 284
            ..:..|||: |.|         |||....|:||                                
Zfish    50 GVYLQPTSE-YSY---------GLSNCGYFSGLKRNESNSQNVVPTCGPYQGMETWLETSRSCRI 104

  Fly   285 -------------------------EDKSCSRYTDTVMNSYQSMS------------VPASASAQ 312
                                     |.:.|.:.|.|...||..::            ||.....:
Zfish   105 EQPNNQITPRSFSPTIKEENSYCLYESEKCPKETITEDISYSRLTPNSCPSSNNNGCVPVPGYFR 169

  Fly   313 FAQ-------------FYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGG-----AG 359
            .:|             ...|..|..|....:|..||..::..:...:|.: ..|.|.|     .|
Zfish   170 LSQTCTTSKGFTDNQTIPTHVVAQRSTRFDSSLSAIAAEASRDESDEPPT-CAPCAPGRNKELRG 233

  Fly   360 GAGIADLPRYPWMTLTDWMGSPFERVV---CGDFNG---PNGCPRRRGRQ---TYTRFQTLELEK 415
            ..|.|..|..|        .||.:.|.   .||...   .|....:.||:   .||:.|||||||
Zfish   234 STGTASSPEPP--------DSPEKAVTVTKAGDSKSESTANWLTAKSGRKKRCPYTKHQTLELEK 290

  Fly   416 EFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR--AVKEIN 464
            ||.||.||||.||:||:.::.||:||:|||||||||||||..|  .::|::
Zfish   291 EFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMSRENRIRELS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 36/54 (67%)
Abdominal-A 456..478 CDD:289192 2/11 (18%)
hoxa10bNP_571230.2 Homeobox 276..329 CDD:306543 35/52 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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