DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and hoxb3a

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:233 Identity:71/233 - (30%)
Similarity:94/233 - (40%) Gaps:80/233 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 SYQSMS-----VPASA---SAQFAQFYQHATAAASAVSAASAGAIGVDS-----------LGNAC 344
            |||..:     .||.|   ||.....||.        ||.|..::|..:           |..:|
Zfish    17 SYQGANGFGYDAPAPAFQNSAHLEGDYQR--------SACSLQSLGTSAPPQPQHAKTKELNGSC 73

  Fly   345 TQP----------------------ASGVMPGAGGAGGAGIA-------------DLPRYPWMT- 373
            .:|                      |:......||:||.|:|             .:...|.:| 
Zfish    74 MRPSLPPEHHPPPQVSPPQNTVNVAATNATQQPGGSGGGGVAGSGGTSKSSSKSSSMATNPTLTK 138

  Fly   374 -LTDWM-----------GSPFERVVCGDFNG-----PNGCPRRRGRQTYTRFQTLELEKEFHFNH 421
             :..||           .||.......:.:|     |.....:|.|..||..|.:|||||||||.
Zfish   139 QIFPWMKESRQNTKQKNSSPSASSANAESSGGEKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 203

  Fly   422 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRA 459
            ||.|.||:|:|:.|.|:||||||||||||||.||:.::
Zfish   204 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKS 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 36/51 (71%)
Abdominal-A 456..478 CDD:289192 0/4 (0%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 11/83 (13%)
Antp-type hexapeptide 140..145 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 5/36 (14%)
Homeobox 184..236 CDD:278475 36/51 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 1/5 (20%)
DUF4074 353..415 CDD:290032
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.